Array 1 225260-229309 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFBM01000004.1 Acinetobacter radioresistens strain APH1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 225260 28 96.4 32 ............T............... AAAATGCCTGGGAATATGAAAACTCACCGACA 225320 28 96.4 32 ............T............... AATGATGGTGTAAAGCATGTTGAATTCCGCAT 225380 28 96.4 32 ............T............... AGCATTCGCCTAAGGAACCCCCATGAGCAAAG 225440 28 96.4 32 ............T............... TAAATTGATATTGCTCACATATAAGTAGCGCT 225500 28 96.4 32 ............T............... AACTTCATACCCAGCTCCGCAATAATGCTAAA 225560 28 96.4 32 ............T............... AAGTCCTAATAAAATGCGAATTGAAATAGGAA 225620 28 96.4 32 ............T............... TAACAAGACGAGAGAATTTTATCACAGAAAAC 225680 28 96.4 32 ............T............... TTGCTAAAGCGATACAGATCACGAACAGAATG 225740 28 96.4 32 ............T............... TGAATGCTCGAAATGGTTTGATGATATTTCAA 225800 28 96.4 32 ............T............... GATACCTTTGAAAGTTGATCTTTTAAACAAAC 225860 28 96.4 32 ............T............... TATAACCCCCGATAAATCAGTTCCAGAACCGC 225920 28 96.4 32 ............T............... GTATTGCAACAAAAGTTGAATCAAACGGAGAT 225980 28 96.4 32 ............T............... TGTTTCGTCATGTACTCCGCTTTTTGATAATG 226040 28 96.4 32 ............T............... AGATGAAGCTAACTGATCTAAAGTTGCAGCAT 226100 28 96.4 32 ............T............... TCCAGTTGAGTGTCCACCGCAAGGTTATCCGT 226160 28 96.4 32 ............T............... TACATCTGCTAAAGCAGCCTGAAGCATTGCTA 226220 28 96.4 32 ............T............... ATCTATCGCTAGAACTTCACCATCTTGCGTGT 226280 28 96.4 32 ............T............... TTGCCACTCAACTTCGGGACGGTGAAACCAGA 226340 28 100.0 32 ............................ TTGCCACTCAACTTCGGGACGGTGAAACCAGA 226400 28 100.0 32 ............................ TCTCTTGCGCTGTCATTCGCGCCGTATTACGC 226460 28 100.0 32 ............................ ATTCAAGATAATTCTCAGGATTTTGACCAAAT 226520 28 100.0 32 ............................ TCTCTTGCGCTGTCATTCGCGCCGTATTACGC 226580 28 100.0 32 ............................ ATCAGCCGGATAGACACTAGAATCCAGACTGG 226640 28 100.0 32 ............................ ATGGGCGACATGAAAGCGGCTGAGCGTCGATT 226700 28 100.0 32 ............................ ACTTTGTGGGATCGAGTCAAGGATGGAATTAT 226760 28 100.0 32 ............................ CTGCTGATCGGCTTCATGATTGTCTGGCTGAA 226820 28 100.0 32 ............................ TACATCGACCAGTTTGAGATTGAGCGCATTAA 226880 28 100.0 32 ............................ TGTTAATGCAATGGTTAGCGTTGACGATCTAA 226940 28 100.0 32 ............................ CAAACGGGTCTTTTTTTATGCCCGCAGTTTGT 227000 28 100.0 32 ............................ CTGCTGAGTATATGCAATATAGCGCCCGTTCT 227060 28 100.0 32 ............................ ATTCAAGATAATTCTCAGGATTTTGACCAAAT 227120 28 100.0 32 ............................ ATTGGCATCAAGTGTAGCTATGCCATTTGCTA 227180 28 100.0 32 ............................ TTGACGGTTCAACTGTTCCAGTGGCGCTTTCT 227240 28 100.0 32 ............................ ATTATTGCGCTTTGGCATCTTCTATTCTTTCC 227300 28 96.4 32 A........................... AAGCCGGGTTATTGGTGTATGTGCGTTTGAAG 227360 28 100.0 32 ............................ AATGTATATCCTGAATTTGGGCCGCCTAAACC 227420 28 100.0 32 ............................ CAGGTCCGCGACTGAATCCAAGTTAGAACCGG 227480 28 100.0 32 ............................ ATCTATTCCGACACTTGCACTTGAACTAACAT 227540 28 100.0 32 ............................ TTCTCATACCCGCCCAACTGTTCAATCAGATT 227600 28 100.0 32 ............................ AAATACGCTTTAGACCAAGTGACGCACCCAAT 227660 28 100.0 32 ............................ TTCACGTCGCGGCAGTGAAATCGCGATTAACA 227720 28 100.0 32 ............................ TTCGGGCCACGCTCTAGTTTTTCTAAGCAGCA 227780 28 100.0 32 ............................ TCTCTTGTAATGGGTTTCATAATATAATATAG 227840 28 96.4 32 ............T............... ACAAATGTTGACCATTGAGCAGTATCCAGAAA 227900 28 92.9 32 ...T........T............... AGAAAATCAAAATAATCAGGTGCAAGCGGTTC 227960 28 92.9 32 ...T........T............... TGAGTATATTGAATTGCCATTACAAGCAAAGC 228020 28 96.4 32 ............T............... TTTAAAATTGCATCAAGTGACTTATATTTTTT 228080 28 96.4 32 ............T............... ACCAAAGCTTGTCTCTGTTCTACACTTGCCGC 228140 28 100.0 32 ............................ AGAGTCACCACACGTATGTAACGTGCCTGATG 228200 28 96.4 32 ............T............... AAGGTGAAACTATGGGACTAAGACCGTTCTTT 228260 28 92.9 32 ...T........T............... AAAAGATGAGCGGACCGGAAAGATTGGGCAGG 228320 28 100.0 32 ............................ TTGATGATTGCCTTTGATTGCAGTTTTTAGAG 228380 28 100.0 32 ............................ ACTTTCGGAATACTGCTGGGTCTGGGCAAAAA 228440 28 100.0 32 ............................ ACCATGCGACTGCACCGACTCATGACTCTCGA 228500 28 100.0 32 ............................ AAAGGTAGTTCAACAAAAGTCTGCCGAGCAGA 228560 28 100.0 32 ............................ TTCAAGTTTTGTTCTATCTGACTTCTTGAATA 228620 28 100.0 32 ............................ AAGATGACGTTTGGCTTCTTTCATCCAGCCCA 228680 28 96.4 32 ............T............... AATCAGTTGTTCAACAGCGACAGACAATGCAT 228740 28 92.9 32 ...T........T............... TTGGAAAGATCGGCAGTGAAAACCGCCGGGTC 228800 28 96.4 32 ...T........................ CATCATTGCAGCATTGGATCTGATATTGTCAA 228860 28 96.4 32 ............T............... GATATGCGCCGTTCGCCAGCTTCACGCTCTCC 228920 28 96.4 32 ............T............... TGAGTCTTTTAAGCCGGACATAGATATAATTG 228980 28 96.4 32 ............T............... TTGATCGTTAATTTCTGGCTGATCAGTATCGG 229040 28 100.0 32 ............................ TGCAGCTTTAGAAAGTTTATGATGTGTGTCAT 229100 28 92.9 32 ...T........T............... AGCTCATGACTTTCAACAAGGCGTTTTAGGTC 229160 28 92.9 33 ...T........T............... AGAACGCCACTAACATGACGATGAAAGCCCCCC 229221 28 92.9 32 ............T.........G..... TATTCCTTATCTTTCGGCTTGTCATCTATGAA 229281 28 71.4 0 ......T..TC.A..A..A.......TT | A [229304] ========== ====== ====== ====== ============================ ================================= ================== 68 28 97.4 32 GTTCGTCATCGCCTAGATGATTTAGAAA # Left flank : TCGTTGGGCCAAAACGTTATACAAGCAACTTGCTAAAGGCTTTGGTGTTGAGTTCATTCGCGATGAAGGAAAAAATTCTCATGATACTATTGCTGATATAGCCAACAGTTATCTCGATCATGGAAACTATATTGCCTACGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCTCTCCCTATTTTGCACGGTAAAACACGTCGTGGGGGTCTAGTCTTTGACCTAGCTGATCTAGTGAAAGATGCTTTTGTGATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACAAAGATATTTTAGATTACATGTTTGGCTTCATTACTGACATATGTAGTAAAATTAAATAAAATCATATAATTAAGTTTTATACTTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTCAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTTAAAGAGGCATAGTAAAAACTTCTATAAACAATAAAATTATTAAAAACAGAATTATTGTTTAATAAATCATCCAATTTCATCTACATTATTAAATTAAAAAGGTATTATGAGCCGAAATATGTCAGAATTTGATTAATTTATGATGTTCATGAGAAAACTGGGTAAGTCTCTTGACCTGGACTTGAGAAAATTAATACTTTTATTAATCGTATTCTGCGTATCTACACTCTTCTTTGTATCTTTAGGCGTGAGTTATTTAATCGTAAAAAACCAGTTAATCAGCAACTCTTTAGCGATTAACTCGGAATATGCAAATAAAATTGCCCTTAATACAGACAATCATTTTCAAAATATATTAAAAGAACTCAAGTACAGTGCTCAATCTTTGGGGAAAGACTTTAACAGTTTTGCGTTAAGAGAAGCAGAAGTTAACCGTCTAAAATACCAGTCGGATCACTATAACAGTGTAGTCATTGGTGATGCTGAAGGCAGACTC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCTAGATGATTTAGAAA # Alternate repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //