Array 1 57544-57395 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBSC01000008.1 Cronobacter sakazakii strain cro2819A3 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57543 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 57483 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 57422 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 102003-104654 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBSC01000007.1 Cronobacter sakazakii strain cro2819A3 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102003 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 102064 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 102125 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 102186 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 102247 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 102308 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 102369 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 102430 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 102491 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 102552 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 102613 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 102674 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 102735 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 102796 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 102857 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 102918 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 102979 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 103040 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 103101 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 103162 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 103223 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 103284 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 103345 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 103406 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 103467 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 103528 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 103589 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 103650 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 103711 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 103772 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 103833 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 103894 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 103955 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 104016 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 104077 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 104138 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 104199 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 104260 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 104321 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 104382 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 104443 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 104504 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 104565 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 104626 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131091-131730 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBSC01000007.1 Cronobacter sakazakii strain cro2819A3 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131091 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 131152 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 131213 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 131274 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 131335 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 131396 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 131457 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 131518 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 131580 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 131641 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 131702 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //