Array 1 693281-693778 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRD01000001.1 Actinobacillus succinogenes strain GXAS137 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 693281 36 100.0 30 .................................... AATGGTTGCATAAATAAGGAGCAATATGGA 693347 36 100.0 30 .................................... CTCAACGTAATTCAACTGGTACAGTTGTTT 693413 36 100.0 30 .................................... TGCACGGTGCGATTAAGCCCATCCTTAATC 693479 36 100.0 30 .................................... CCGTTAGCGAACGCCTGAATAACAGAACGA 693545 36 100.0 30 .................................... CCGTTAGCGAACGCCTGAATAACAGAACGA 693611 36 100.0 30 .................................... AGGCTTTTTAAGGATGTCGAGCTTTCTAGC 693677 36 100.0 30 .................................... AATAAAAAGCCCCGACGGAACTAATCCATC 693743 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : CGAACCGGTTTCCCTAACGGATTTTCAGGGCAAAAAAGTGCTGATTTATTTCTACCCGAAAGCGCTCACCCCCGGCTGCACCATACAGGCCTGCGGACTGCGCGACGCCAAAGCGGAACTAGATAAATCAGGTGTCATCATTTTAGGCATCAGCCCGGATTCGCCGAAAAAACTGGCGCAATTTGAAGAAAAGCAAGCGTTGAATTTCACCTTATTATCCGACGAAGATCACCAAGTTGCCGAGCAATTCGGCGTCTGGGGCGAAAAGAAATTCATGGGAAAAGTCTACGACGGTATCCACCGCATAAGTTTTTTAATCGACGAAAACGGCAAGATTGAACAAGTGTTCACCAAATTCAAAACAGGCGAACATCATCAGGTGGTGTTGAATTATTTAACGGAAAAATAACGGAAAATTTGACCGCACTTTATACTGCAATTAGTTTAATTTAAGAACGCAGAGTTCCAATCTGTGGAATGGCTCAAAATACGACCCAGTA # Right flank : TTGGGACGCTGAAAAGCCTTGAAATATAACGTTTCAAGGCTTTTTTATTACTTAAAAAATACGGTTTAAAACAGCAAAAGTTGGTTGGCATTGACTTTTTTTTCTTGCAATTTTTTCTCGCCGACCAGGATTTCCATATTGGCGAATTGTTTTTCCGTGATGGAAATACAACGAATCGAACCTTCTTCCGGCAAATGTTCTACTAATCTTTTATGGTGCTTTTCCATTGAATCTCGCCCCCGAATAATACGACTGTAGATGGAAAGTTGCAGCATTTGGTAGCCATCTTTCAGCAAAAATTGGCGAAATTGGTTTGCCGCTCGCATTTTGGCTTTGGTGGTAACAGGTAAATCAAATAACACAATCATACGCATAAACACATTCTCACTCATATTGATGCTCCGCAAGTGGTATAATTTCAGGCAGTTTTAGCAAATCGGCATTGCGTTGGCTTAATGCCGTTTGAAAGGAGCCAACGCTTCGCTCAATCGCCGTTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2008100-2007330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRD01000001.1 Actinobacillus succinogenes strain GXAS137 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2008099 32 100.0 35 ................................ GCCGTTTTCGGCGATCAATTAGCCGCGCTCTATGC 2008032 32 100.0 33 ................................ AGCGTTGTGTTGAACAAGCAGTTGAGCAAATAA 2007967 32 100.0 36 ................................ TGATGCATCACGCGTAGTCCCAACCGCAGCCGAAAA 2007899 32 100.0 37 ................................ CAATTCACCATCGTACCGAAATCCGAGGGTTTCGGCA 2007830 32 100.0 35 ................................ CCGCCGGGATGGTGATGCCGGCGGCCTCTTTGGCG 2007763 32 100.0 35 ................................ GTTAAAGCGCAGTTTAACACTGCAACAACATTAAA 2007696 32 100.0 33 ................................ GCGAAATCAACCATGCTTAAAAAATTGTATTTG 2007631 32 100.0 34 ................................ GCGTTATCGGTTTCCGCCGGCAAAGCAAGGGTAA 2007565 32 100.0 35 ................................ AGCGCGTTAGCATGATTTGCTTGTTTAGTTTTTAG 2007498 32 96.9 35 ............G................... GCAAGTATAGTTTACGCCGGGAAAAACGAGGAGGT 2007431 32 100.0 36 ................................ ATCAAGCGTTGAAGGTGCGGATATTAATAGCGGTAT 2007363 32 84.4 0 ............G..............ACT.T | C,T [2007332,2007334] ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.4 35 GCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AAGGAAATTTTACCCATGCTGATGTTGATTACTTACGATATTTCGTTTGACGACCCCGGTGGGCAGAAACGTCTGCGCAGGATTGCAAAACATTGCCTAGATTACGGTGTGCGGACGCAATATTCAGTGTTTGAATGTGATGTGACGCCAGATCAGTGGGTGAGGCTGAAAGCGAAACTGCTGGAAACTTACGACCCCGAATGCGACAGTTTGCGGTTTTACCATTTGGGCAGTAAATGGCGCAGAAAAGTGGAGCATCACGGCGCCAAACCGGCGGTGGATATATTTAAGGATACGCTAATTTTATAATTCGCTAACCTGTGGTTCTCATCAAAATGCGGGCAGGTTAGCGATGGTAAAAAGTTCTTTAAAAATCAGGATATTATAAAAATGCAGTATAAAAATTCATGCTGTGCTATACTGCAAATCACTCCCTATGCGGAAGTTTAGCGAATTACAGGCCGCCAAGCCTTACCCTGCAAAGCTTCAAACCATAGGGA # Right flank : GATTTTGGTTAGCGTCAAAATAAAACGCCCTGTGTCAGCAGGGCGTTTCTATTTATGGGTTATGGACTTAGAAATTTGCGTTACGCGGTGAACGAGGGAATGGGATTACGTCTCGGATATTTTGTACGCCGGTGACATAAACGATTAGGCGTTCAAATCCCAAACCGAAACCTGAGTGCGGTACGGTACCATACTTGCGTAAATCACGATACCACCAGTAGTCTTCAGGTTTTAAGCCCATTTCTACCATACGTTTGTCTAATACGTCTAACCGTTCTTCACGTTGCGAACCGCCGATGATTTCTCCGATTCCCGGGGCTAAAACATCCATTGCCGCTACAGTTTTACCGTCATCGTTCAGACGCATATAGAACGCTTTAATGCCTTTAGGATAGTTTTTCACCACAACCGGTGATTTGAAGTGTTCTTCCGCTAAATAACGTTCGTGCTCGGAAGATAAATCGATTCCCCATGAAACCGGGAATTCAAATTTTTTACCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //