Array 1 112291-112007 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPNZ01000003.1 Streptomyces typhae strain p1417 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 112290 29 96.6 32 .........................C... AGCCTCGCGCTGGGCGGCCTGGGCTCCGGCAA 112229 29 100.0 44 ............................. ACGAAGTCGCGGAGAGGCTGCGGGATGGGTGCCCGGTTGACCTG 112156 29 100.0 32 ............................. GTCAACCGCGCCCTGGCCGACGGCGCGAAAGG 112095 29 93.1 31 .............C..............G CTGGCCCCGACATTCGGTAGGGCGTGCGTGG C [112069] 112034 28 79.3 0 ...-.......ATC...A.......C... | ========== ====== ====== ====== ============================= ============================================ ================== 5 29 93.8 35 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTCGAGGGACAGCAGGGCGCGGAGCCGTCTCATCTGGTGCCTGACCTGCGCAGATCGTGATGCTTCTTGGATTTTGCGTGATGCTGGCCCGTGGGCGGGTTGGACCTTGCCTCTGGGAGGAACCGTTGTAGCCAGGAGGGTGCGGCCGTTGGCTCGTGCCAAGTAGATGGCTGGAGGTGTGGGGCGGAGGTACTGGTGCCTCTGGGCTGGTGGCAGACCAACTCTTCCGCGGTGGTGGGTGGGTTGGGGTGAGGGTGGAGTCTCATGCGGGCCATCCTTCTTGCAAACTGTTCAGCATTCGCTGACCGTTGAGGTTGCCGCAGAGGTGGTCGGTCCGTGGTCCCGATCCGGTCCGCTGGGCGGCTGGAGCGGGGCGTCCAAGTGTCGGTGTTGCGGTCGTGGGTAATGCGGGAGATATGCCTTCTCGATGCTTATGCCGGAGTCGGGGAAAGTGGTGGGAATCAGGGTCTGGGCTTAGGGAACCCGCAGGTCAATCAGT # Right flank : AGGCTTTCGGGCGTGTCTAGGCCAGGCGCGTATGGAGATCCTTTCCGGGCGCAAGGTCCGGACGCCGACTGGCAGACGCGTGTGTGACCTGCACCACGCCTGCCTGTCCACCTGGCTCAACGGCGGCATCCCGCCGCCCAGGTTGCCGCGTGGGCGGGCAACAACGTGTCGTCCGCCGGTTCTGCTGGTCATCTATGCGCGATGCATCGTCGGCCAACTGGCCGACTACCTGAAATGGGTTGAAAGCTTCCAAGACCTACCAAAGACCGCGACGTGATGAGCGACCCCGGAACCCTGCGAAGTGCGGGCCTCAGGGCGGCTTCGCCATGTGCCGTAAGGGGTCGAGGTGCCTGCTCAGGCGCTCGATTCTGTGGGACGCCTGTGGGACGGACACCCGTAGAAACCCGATTTCCGCTGGCGTCAGCCGGACTCTCCCCTCGGCGGAGGGAAGGAGTCCGATTTGCCTCGGCGGTCGGTCAGACGTGGTCTGACCTGCCAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115971-115758 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPNZ01000003.1 Streptomyces typhae strain p1417 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115970 29 96.6 32 ................T............ AACTGACCGTCTCGGGCAGTACGGCCCTCTGA 115909 29 100.0 32 ............................. CTGGAGGACGACACCTCGTACGACACCAACGG G [115892] 115847 29 100.0 32 ............................. ATGGCGGCGGCGGGAACGCTGATCGGCGAGCC 115786 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCTGGTCGCGACGCTGTTGCTCCCCGCAGCCGCGGGAGATGGTCCCACCAGATTCCTCGTCTATTGCTGGTACAGCCTGTGTATGGTGCCTGACCTGCGCAGGCCGTGATGCTTCTTCGATCACTCGTGACGCTGGCCCATGGGTGGACCGGATCATGCCCCTGGAGGACCGCTGTAGCCACGAGCGGCGCGGCAGTCGCCGCTTGCCGAGTAGATGGCTGGAGGTGCGGTGCGGAGGCGATGAGGCCGCTCGACTCGTGGCGGCCAGCCCTTTCGGGTAGCGGGTAGGTTGAGGCGAGGGTGAATTCTGGTGATGGTCATCGTTCTTGCCAACTGCCCAACATCTGTTGTCCGTGAAGATGTCCGCAGAGGCCGTCGGTCCGCCATTGGCATTGCAGCCTGAGCAATGCGAGAGATGTTCCTTTTCAATTTATATGTCGGAGTCGGGGAAAGTGGTCAGAAACAGGGTCTGGGCTTAGGAACACCGCAGGTCATCCGGT # Right flank : GTCGGTCGCCGACGTGGGCGTCGGCCTTGTTGCTCGGGTGGGCCGCGGTTTCCGGGGGGAGTCGGTCCTGGCGGGCGGCTGTGCTGAGAGGTGGAAGGCGGGGGTGGGTTTGTCAGATGGGCAGTGGCCAGCTCGGTCCGGTGGGGGAGTCGATCCAGACGGTCTGCTCGAAGGGGGTTGCGGTCATTCCGAAGCCTGTGAGGTCGGGTGCTCCTGCGTCCTGCCAGTGCCCGAGGGCTGTTTCGACCTGGTCCCACAAGCGCAGCGGTCCGTGCTGGTGCACGGTCCATCCCTCACCGCCGGGTGCGGGTTCGGTCCATGCCTGGGAGCCGGTCGCCACGTCGCGCAGGATGATGCCCAAGTGGGTGGTCATCAGCTCGGCGGAGGGGGCCGCGAGCTGGGCGACGAACCGTCCCGCCCATTCCTCAAGGAGCGCGGGGTCCCGCAGCGCGCGCTGGGTTTCACCCTCGAGCCGGAAGAAGCGTGGGGAGGGGGGCCGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 163387-163860 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPNZ01000003.1 Streptomyces typhae strain p1417 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================================================================================================================== ================== 163387 25 100.0 36 ......................... TCCCTCGCGGTCGCTGTCGTCATCGAGTACCCATGC 163448 25 100.0 36 ......................... TCCCGTCGCCCGCGCCGCGGTGTCCCCGCGCAGCAG 163509 25 100.0 7 ......................... AGCGACT Deletion [163541] 163541 25 80.0 35 ....C...T...T..TT........ TCCAACTTGGGTGCCCGGGCCATCAGCAGTGCGGC 163601 25 76.0 149 ..G.....G..A.A..T.A...... TATCTTCCTCCCTCAGCAGTTGAGTTGAAGGACGGTGCCCGCACAGGGGGAGCCACTCCCGGTTCCGGCCATGAGCATGATCTGCGTACTCTGATCCCAGCTCTTGAGCGGCTGTGCCATCGCCTTCGCTAGCTACCGTCCGCTTCGAG 163775 25 80.0 36 A.G..........A.......G..G CCCCTGGGCCTTGTGTCTAACCAAGCGGATAGCGCA 163836 25 72.0 0 ..GC.........A...A...A.AG | ========== ====== ====== ====== ========================= ===================================================================================================================================================== ================== 7 25 86.9 50 GTCGTCCCCGCGCCTGCGGGGCTGT # Left flank : GCTGTGGTGACCGTCATCATCCTCGCTAACTGCCCCGCCGGCCTGCGCGGATTCCTCACTCGCTGGCTCCTGGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCAGCGCCCGCATCCGCGACCACCTGTGGGACGAAGTCCGCCAGTACGCCAACCAAGGCCGCGCCCTCCTCGTCCACCAAACCGACACCGAACAAGGCTTCACCTTCCGCACTCACAACCACGCCTGGCATCCCACCGACCACGAAGGACTCACCCTCCTCCACCGCCCAGCCCCTCAAACCACCCACCCGGGAACCGACCGCCAGCCCAAGCCTCCGAAACAGAACTGGAGCAAGGCCGCTCAACGCCGTAAGTACGGCCGTCGCTAACCGATCAAGCCCACACCCGCACAGACAGATCGGCGCCATCCATGCGTGAAGAGATACGAGTTATGTCGGAGTTCTGGGAAGTAAGTAAAAACCACCATCTCGCCTGACAAAGCCGCTGGTCACGGCCT # Right flank : GACGCAAGTCGTGGTTGGCGGCTAGTTCCCGCTCGTGTGTCCCCTGGCTGCTCCCCGTGCCCAACGAAGAAAGCACTACCGCAATGCTTCGCACATGCCAGTCTAGCTGGGCACGGCCACATTACAGCGGCAAACGACTGCAGGAATTTAGCACTCTCCGCCAGACACAGCAGTTTCAGTTTCGGCCCTCTCCTCACCTCGGCTCGAAGCTCTGCGCAGGGCTTCTCACCCATGCGGATGGTGTAGGAGATCGTCGGAAGCCTTGGAGACGCCAAGGCTTCTCGCACTTCTAGGGCTGGTATCCCACATACGTCCCACAGCTTGAAGAGGTACGGCCACGAGCTCCCGGGTTTGCGCAGGTCAGCTGCCGTAGCGCAGAAAGCAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCTCTTCGTAGATCCTCCTTCGGGAGGGCTCCTTTTCGTCCGCTGGTCGGCGGAGGAAGAGGGGC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGCTGT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //