Array 1 326856-327879 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBC01000001.1 Clostridium tetani strain COR1 contig_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326856 35 80.6 30 A.A...A..-TG.T...................... AGCACAGGAAATATATACAGCTGCTAAGAG 326921 36 100.0 30 .................................... AGAACTGTATATTATTCATAATTCTATTTA 326987 36 100.0 30 .................................... GAACAAACTATAGTAGACATTAGAGAAATG 327053 36 100.0 30 .................................... AGAATATATAAAGAACAAATTAAAAAAATT 327119 36 100.0 29 .................................... AAGCTATTTTAAGGATTTTAATAAAAACA 327184 36 100.0 30 .................................... ACTTTTTAATTTTATGTATTGTTAGTATTA 327250 36 100.0 30 .................................... GAAGTGAATATTGCTCACAACTCAGAAACA 327316 36 100.0 30 .................................... ATTCATAAAGCAGATGAATTATTTTTTTTG 327382 36 100.0 30 .................................... ACTGTTAAAGATGATGTGAATGTATGAATT 327448 36 100.0 30 .................................... TTAAATGATATTCCTTATTCAAAAGTATTA 327514 36 100.0 30 .................................... ATTAATATTGACGATATATAAATCTATACA 327580 36 100.0 30 .................................... TTTTTTTATTGCATATCTTTTTTCTTTTTA 327646 36 100.0 30 .................................... AGTAGTTGGTGATGCTCATACTACTATTTA 327712 36 100.0 30 .................................... CTATCTAGTATATCTATTACAGCTTGTACT 327778 36 100.0 30 .................................... TAAACAAATGAGACTTTATGCATTAGGAGC 327844 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : ATTCTTTCCTTATTTTTAAAGAAAGTATTATAAAGTTTAAATTCTTCCATAAGGAGTGGATCTTTAACCTTTAATTCTCTCATAATTACAGTTGCTCTGTCAGTAGAGAATTCCTCACTATAACAAAAAACATCGTAAAGCCAATCTTTTGAAGGTATTGGTTTTTTCATGTTAGAATACACAAGTATATTACTGGTTGTATCTCCTTTTTCTATATGATATTTACTCCAAAAGGCATTGTTATTTGTTAAATTAATAATTTTAATATTTTATATTCCGAGTTCATCTATATCTTTAGAAAAATCTTCATTACTATCATACCAAAATACTATATGACGTTTCTTTCCATTGGTTAATGGTTTTAAAAATAGTTCGTTTATAAAATTTCTTATTTCTTGTAAATTCATTTCTATTTCTCCTATCAAAATAAATAATTTGCATTCCTTCTAATTTATTTTAATTCCATGTAAATTATTATAACAAAAACAAACACTTTTTCT # Right flank : TAGGAACTACCAAAGCCCTTGAATCTGCTAAGTTTCAAGGGCTTTGGTCTTTTTAAAAAACATTTAATTGACTGGAATTTATATTCTTTTCTTGTGGTTTTGGCGAACCTACTAAAAACTTCATTTCACAATATTGTTTTTCTGTAATTTGCAAATACCTAACAGATCCTTTAGGAGGTAGATTCTTCTTAAGCCTTGCAACATGCTTATTTGCACCATCTATTCCATTACAAATTCTAGAATATACAGAGTATTGAATCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTCTGGTACTCTTTTCTATCTTCTCTTTTTACAACAGGCAAATCAAAAAATACAATTAGTCTCATAAATCTCCTACTCATAATAATGGTATTCCAATGGTTTTATTAGTGGTAATTTTAATAATCTAAAATCTTTTTTACTACAAGCCGTTGTATAAGAAGCTACCATTTTATCTATGGCATTTAAAATAGAATGATTTTGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 34388-35392 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBC01000013.1 Clostridium tetani strain COR1 contig_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 34388 30 100.0 34 .............................. TACAAACTTAGAAAGTCCACGGTGTCCTCTCAAT 34452 30 100.0 33 .............................. AGGTAGAAGGCTTGTGGCGTTTGGTGGTGAACT 34515 30 100.0 34 .............................. ATCATAAATTTAATACAAATGTTACGGATATTAG 34579 30 100.0 36 .............................. ACCCTTATTTATATCTTTTTTCCCTAACTCTAAAGC 34645 30 100.0 36 .............................. TGTATATATTACATTACATACTGATATATCTAACTT 34711 30 100.0 35 .............................. ACTTATGAGTGCTAAAGATAAATACACAAAAGACT 34776 30 100.0 34 .............................. ATAAAAATATGATTGCTTTTAAGGAGGTATACTA 34840 30 100.0 34 .............................. GTATGCCGATAATGGAAAAAGAAATTGGGTAGAC 34904 30 100.0 35 .............................. GGTTCATATCTGAACATATCTTCTAATCTTGATAT 34969 30 100.0 35 .............................. AAATAAAAATTATTCATTTTGTTATTGTTAAATCT 35034 30 100.0 36 .............................. GTAGCTATTCTTTTTAAACTTTTACTATCTGTATCT 35100 30 100.0 34 .............................. TTTTATCCTGTAGCTTAACCGATACTCCATTCTT 35164 30 100.0 36 .............................. CACAATCCATAATCATAACATTCTTGTGCTGTAAGC 35230 30 100.0 37 .............................. TCATTTACATGGCTATAAGTTTTGAGTGTCTGCTCAA 35297 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 35363 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGCAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGGATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //