Array 1 72954-74270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOM010000001.1 Streptococcus salivarius strain DFI.1.41 LFFAKGDC_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 72954 36 100.0 33 .................................... CCAATCTTTTCAACATCAATCTTAACTCCATCT 73023 36 100.0 34 .................................... TAATACCCAAGCTTCTGTTCCGACCGTTTGTTTA 73093 36 100.0 35 .................................... ATGGTCGTCACTTCCATAAACCTATACTTTCCATT 73164 36 100.0 35 .................................... TCAAATAAACCAGATTCTTTATTAATAGTAAGTAT 73235 36 100.0 34 .................................... GGATTGAAAATTATTACAATTAAAAGGACAATGA 73305 36 100.0 35 .................................... CTTATTGTGTTTACGTCTACCCCATTTCATCCCTT 73376 36 100.0 35 .................................... AGTCTTCTGACTGGTTGTTAATCCATTCTTGTAGT 73447 36 100.0 36 .................................... CTTAAATCGCATTTCCAACATGTAAGAACCCCCACC 73519 36 100.0 35 .................................... ACAGATGCAGCATAAATAGTGATATTGCCAAATGC 73590 36 83.3 33 ..........C.C.C.T....C..........T... TTTTCGTTTAACGTTTCATTAATTAATTCGTTC 73660 36 86.1 37 ............TCC...C.A............... TCCCCGACATTAACGCTATCGTACTGTTCCTTGCTGG 73733 36 91.7 38 ........T...TA...................... AAAATCTTTGTCAAACATCGTTGACCTCCAATTGTTTA 73807 36 94.4 36 ............T.C..................... ACGTGGATTGTCTGGCGTAGTGGTTAAAGCTACTGT 73879 36 88.9 27 ............TG..................TT.. TCAATGTAATCAATCCTATTATTTAGT Deletion [73942] 73942 36 83.3 44 TC.T........TA....C................. GCAGGAGTTTCACTCGTTCTTGGTGCAGTACTTGGTAAAGTACG 74022 36 91.7 36 .......C....TC...................... CTGCTAAATATGCTTCAAAAAGATCATTAATGTTTT 74094 36 88.9 34 .......C....TC..............G....... AGTATTATTTTTTTGTTCTTCCATTGTTGTTCTT 74164 36 86.1 35 ....A...T...CC..................T... GTAAGGTTGTAGAGTTTAGGAGTTGCCTTAGATTT 74235 36 69.4 0 .......C....CA.......C...A....TTTTTT | ========== ====== ====== ====== ==================================== ============================================ ================== 19 36 92.8 35 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTGGAGAACTGGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTATTTTAATCTCAGTGAAGAAGAACGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAGTTACTTGAAGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGAGCTTCTATAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTAGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCAACCAAGATAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTGCATCTGCTTACAGATGACCTCGAGGCAAAGGCTTTTATGACCTTATTACAGATTAAAGAGGTATCCTTAAACGACTTACCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGTGCTGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 38986-38556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOM010000011.1 Streptococcus salivarius strain DFI.1.41 LFFAKGDC_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38985 36 100.0 30 .................................... AAGAGTGTTTAACGCTTCTCTTGAAGACTT 38919 36 100.0 30 .................................... TCGAAATAATTGATTCCGATGTCAAGCGTG 38853 36 100.0 29 .................................... TTATTATATAGAGGTGTTTAGTCAAGTAT 38788 36 100.0 30 .................................... CGGCTCGTGGATTGAGTACACACCTAAGCC 38722 36 100.0 30 .................................... ACTAAATCAAAATCAATACTATTTAACTCT 38656 36 100.0 29 .................................... TTTGTTGGCGCAATTGACTTTTTCCAAGG 38591 36 88.9 0 T............T....................GT | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGTGGAAACATATGATAGTTTTTATAAGCAAATTGGTCGACTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGATCAATGCTATTTAAAGATTGATGAGGAAAATAGTAGGTTTGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTAGAGTTTATGTATGAAAGTGTGGCGAAACACTATCCAAGCAATAATTTTCCAACGAGAGACGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATTTTGAATATCTTAAATCAATTGTTTCATTTTAATTACCGTATAAGATATCCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGAATTGACAATGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAAGGGTTGTCAGGTTGACCGACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCAGCGATACAGTGGATGATACCAAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATAACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTATTGGATGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //