Array 1 872-2535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZZ01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N42482 N42482_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 872 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 933 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 994 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1055 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1122 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1183 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1244 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1305 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1366 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1427 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1488 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1549 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1610 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1671 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1732 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1793 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1854 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1915 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1976 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2079 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2140 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2201 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2262 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2323 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2384 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2445 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2506 29 96.6 0 A............................ | A [2532] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16342-15216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZZ01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N42482 N42482_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16341 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16280 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16219 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16158 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16097 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16036 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15975 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 15914 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15853 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15731 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15670 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15609 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15548 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15487 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15426 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15365 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15304 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15243 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //