Array 1 114593-107226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037988.1 Rathayibacter toxicus strain CS39 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114592 29 96.6 32 ............................T ACGCTCTCCTCGCCGTGAAGGCAACTAATATA 114531 29 100.0 32 ............................. CGGCGGCTTGGGTAGTGTTTTGGGGGTTATTT 114470 29 100.0 32 ............................. ATTCTCACAGACGAAGACTTCCACCAACCAAA 114409 29 100.0 32 ............................. GGTTACTTTACTCTCGCAGTTAACGCATCGGA 114348 29 96.6 33 ............................A GGCCCTAGATCTTCCATCTCCGCGACATGAAAA 114286 29 100.0 32 ............................. AGCTGCATCCTCAACTTTCCGAGCCTTATTCA 114225 29 96.6 32 ............................G AAGAACATCGTCCAAGGTTTTTCCAGACTCAT 114164 29 96.6 32 ............................G CTTTTTTAGTCGGCTGTTTACGTGCGGCCACC 114103 29 96.6 32 ............................T TGATTGCTGTTGGATCCATGGACAGACCGCCC 114042 29 96.6 32 ............................T CCCTCGAAGAACTCCACACTAATCAGATCAAA 113981 29 100.0 32 ............................. ACAACGCGGCCAGCCCAAAGATCAGCAGTAGC 113920 29 96.6 32 ............................G TTGTCGAGTCGATTATTCGCGGGGTTGTCGTC 113859 29 96.6 33 ............................G CGTCATCCCGTCGATGCCGGGTTTTCGCACTAA 113797 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 113736 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 113675 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 113614 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 113552 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 113491 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 113430 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 113369 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 113308 29 100.0 32 ............................. TTTTCCGGCAATCTTCGCGATATTGGTCTGGA 113247 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 113186 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 113125 29 96.6 32 ............................T GAAGGACCAGGCCACTATACGGTGCACACGGA 113064 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 113002 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 112941 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 112879 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 112818 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 112757 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 112696 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 112635 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 112574 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 112513 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 112452 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 112391 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 112329 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 112268 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 112207 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 112145 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 112083 29 96.6 32 .........C................... TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 112022 29 100.0 32 ............................. CTCTGGGGCCTCTCTTTCTCACGGCGCTAACC 111961 29 96.6 32 ............................G CTATCTGCTCACAATGGCAGACCAGCACGGCG 111900 29 96.6 32 ............................G TCCGCCGGGAGGCGCAGGCGGCTGGTAGCGAA 111839 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 111778 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 111717 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 111655 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 111594 29 100.0 32 ............................. AGAGGCGATAATGCCGATAGCCCTGAAGCTTA 111533 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 111472 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 111411 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 111350 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 111289 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 111228 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 111167 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 111106 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 111045 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 110984 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 110923 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 110862 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 110801 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 110740 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 110679 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 110618 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 110557 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 110496 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 110435 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 110373 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 110311 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 110250 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 110188 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 110127 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 110066 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 110005 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 109944 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 109883 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 109822 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 109761 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 109700 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 109639 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 109578 29 96.6 32 ............................T ACAAAAGGAATACCCAAGCCTTCGATTCTTTA 109517 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 109456 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 109395 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 109334 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 109273 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 109212 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 109151 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 109090 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 109029 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 108967 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 108906 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 108845 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 108783 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 108722 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 108661 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 108600 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 108539 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 108477 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 108416 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 108354 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 108293 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 108231 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 108170 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 108109 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 108048 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 107987 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 107926 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 107865 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 107804 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 107743 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 107682 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 107621 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 107559 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 107498 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 107437 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 107376 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 107315 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 107254 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 121 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //