Array 1 34220-34919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHP01000016.1 Pectobacterium wasabiae strain NCPPB 3701 ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34220 29 100.0 32 ............................. TATGACAAATCCAAGTCCAAAGGCGTGGATTC 34281 29 96.6 32 A............................ AAATAATGCTGTCTACGGATTTTTGGTGTGGA 34342 29 100.0 32 ............................. AAATACCATTCTTCGGTGGTGGTGCGTACAGT 34403 29 100.0 32 ............................. GGGAGACGGGCTATACTCCGGAAGGGAGATCA 34464 29 100.0 32 ............................. ATTAGCCGGGTCAGCTAATTCCGTAATTGGGA 34525 29 100.0 32 ............................. AACGCTGACGACACGCTGCTGGAAATCATCAA 34586 29 100.0 32 ............................. TACAATCTGGCGGCGCAATAAAAAGCGACTTG 34647 29 100.0 32 ............................. TGACTGACGGGTAGTAATTCTGCTTTACGTAT 34708 29 100.0 32 ............................. AAGATCAGTTAGCTGACGCTATGGATGACCAA 34769 29 100.0 32 ............................. TGCTCGGATACGTGTTCTGGTACTCCGTAATC 34830 29 100.0 32 ............................. AAGTTGCAGCTAATCGGCATTCTGCCGAATAT 34891 29 82.8 0 ............T........G....TAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGCTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACAATGCACAGCCACCTGCAATCCCTGAGCCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGTATGCTGGTTGTTGTAACGGAAAATGTTCCACCACGCCTACGCGGCAGGCTAGCGGTATGGTTGCTGGAGGTTCGCGCGGGCGTGTATGTGGGTGACACCTCGCAGCGAGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTAGTGATGGCATGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGACGGACTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTCTTCTTCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : ATTGAGGGCTGGAACAGCTAAAGGATTAGCTGTTCTGGCTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCTTTGAGTCTGGGGATTCAAGCTGGGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACCTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGTCTGTAAGCTGACGTCTTGATCAATGTGAATGCTAACCACTTTATGAGGAATAGATACGTCATCCTCTGCGCTACGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCGTTTTCAATAAGTTTCTGATATAACTCATATGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAATATTTTCTTTTGATGGGTGAAAATCAGTTGTGGTGTCAAGAAGGACGCGTTTTCCTTCTCAATATGTCGTTGTTGTCCTGCGTTTGACTTCAAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36914-37493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHP01000016.1 Pectobacterium wasabiae strain NCPPB 3701 ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36914 29 100.0 32 ............................. CGCTTGTCGACAGCTTCTCTGTTGTCGACAGG 36975 29 100.0 32 ............................. TGGAGTCCTCGTCGTGGAAGACTATCGTAATT 37036 29 100.0 32 ............................. CAATACTCCTAAACCCAAAGGTGCATTGCAGG 37097 29 100.0 32 ............................. ATGCACGCGGCGGCGGCGCATTTAAGAACCTG 37158 29 100.0 32 ............................. CCAGTAATCGTGGGAGAAAAAGACGTGCAACT 37219 29 100.0 32 ............................. GACTTCCAGCAGACGGACGGGACGTGGAATAA 37280 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 37342 29 86.2 32 .......AT...TT............... TATCTCAAGACTGGCGCGTTCTTCGCTCAGAA 37403 29 93.1 32 ..A....T..................... TTTGTGACCGTGCAGGGTCACTCGATGGCTAT 37464 29 82.8 0 ..A.........T........CC.....C | T [37490] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCGCAGTCTTCAATGAACGTATTAAAGCGCTCCCTGCTGGCATCGCTTTACTGCGTGTACTTATGGATCAGCATGAGCTAACGCAGAGTGATTTTGAAACTGAGATCGGTAAAAAGTCTCTGGTATCTCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCCAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTCTTGCCAAGCACAGCATGATGCGCCATGTAATAAAGACTGCCTTGCTGGACGGTTATCTGAATAATCCCTGCGTTATCAGGGATTACGTTATGACTGAGATGCATTGTAAGAAATCATAGAAAGGAATACCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTGTTATAAAACAGCTCTCTACTTTTAGA # Right flank : CGTTTCTGGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATACCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAACCAGCAGGTGATGGCGAAGCGTTCCACAGAACATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCCGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAAGGCTCCGCGCTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGTAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATTAATGTTTTCGACACCATCCAGCAAGGTGCTGCGGGTGCATCATCCCGTAGCGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167732-167939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHP01000005.1 Pectobacterium wasabiae strain NCPPB 3701 ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167732 28 100.0 32 ............................ GATTTAAAAACTCGATAATTATCTGTATTAAC 167792 28 100.0 32 ............................ GATGAATACTATCAATTAGCAAGTAATTTCAT 167852 28 100.0 32 ............................ TGAGTCCTCGATTACTGCATAGGCTCCGATTA 167912 28 78.6 0 .......A...A.C......TGA..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGCGAACTGCATGTTTCCATATTGGTGGGCATAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCGCAATTCGGGACCTCATCCTCATAGCCCAGCGCAGAGCAAAATCGCGCCCCAACAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCGCTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCTGACGGGCAGCAGTTAAGTATCTGTCTGGGAGAGGGTGACGAACGGATCATTGTGGAGTGATGGGGGGAGATCAGACGGGATGGAGAATAGAGCCTGTCGCGTACTGCTTCTCACCCCCTTTTTTAACGCACAGTCGTAATTTACTGATTTATAATCACCTTTTTCCGCAGCCATAAAAAAGGGTTTTTCTGAGAAAACAGGATATTCTCTTTAATAATCTGGTGGTTAGCATAAAATTCTTACG # Right flank : AATAAAACTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACACGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACCGTCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAACGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGTCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCTGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183864-184852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHP01000005.1 Pectobacterium wasabiae strain NCPPB 3701 ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183864 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 183924 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 183985 28 100.0 32 ............................ AACAACAACGAGCGAACCGCGTAAAACCTGTT 184045 28 100.0 32 ............................ CCAATCGCGCCAATACCAACGGCAATTAGAAC 184105 28 100.0 32 ............................ TGCAAATTTTCAAGCGCAAGCATTAGCGAACC 184165 28 100.0 32 ............................ GCATAGATATTGTCGATTTGGTTATTGCCGGG 184225 28 100.0 32 ............................ GCTACCGTCTGACAGTAAAGACACCGGGCAGA 184285 28 100.0 32 ............................ GCATCCTGACGCTATTTCATTTGCTCGCAATG 184345 28 100.0 32 ............................ CACCACCGGCAGGAGATCAACAGCTAGTCCAT 184405 28 100.0 32 ............................ GGGACAAGCAGTCCGTTCTCTGTAATCGTCAC 184465 28 100.0 32 ............................ ATGAACGCAATTTCATCGGCCTCTGTTCCGAC 184525 28 100.0 32 ............................ TGCTGCTTACCGTGCTGTGCTGACGACGCAAA 184585 28 100.0 32 ............................ AGTTCTGACATTCAGTGAATGACATAACGCGC 184645 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 184705 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 184765 28 100.0 32 ............................ AAGTTTTAGTTGATTGCAATAGATCCGCATCA 184825 28 85.7 0 ....................T....TGC | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGATTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGACGTTATCCATAATGTATTTTCTGCCGCTATAGATAATAGGCGCTGATGTCAGCGAAATTAATCGCTGGCTAACTATTTAATAAATAAAAATATAATTTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTAGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CTTATCGAAATAAATCACTGGCGCAGCATATTGTGGCGTTATTCCCCATTCAGCGTGACAATCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTTAGGCATCCGTTGGTGATGGGGATCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCAGGCATGTCGTCACTGCCTTCATACGTATGGCGGTAATATGGTTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCTGAGGTATGTTTGATGAACACATGCATCAGCCCGACTTTTATCTGGCGCAGCGCAGTAACCTGCACCAGTATTTCGTCAGTTACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATTCCCGCTATCGGGCTTCTCGTGCCAAAATTGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38-186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHP01000084.1 Pectobacterium wasabiae strain NCPPB 3701 ID_167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 99 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 159 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAGACTGATTTTTTCCGGCAGTTGAGTGTTACCG # Right flank : AATAGCACCCCGCCACCAACTTAATTTATTGATGTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //