Array 1 205495-208042 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXG01000004.1 Listeria monocytogenes strain 18ZQLM12 NODE_4_length_213450_cov_94.786357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 205495 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 205561 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 205627 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 205693 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 205759 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 205825 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 205891 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 205957 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 206024 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 206090 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 206156 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 206222 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 206288 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 206354 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 206420 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 206486 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 206552 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 206618 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 206684 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 206750 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 206816 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 206882 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 206948 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 207014 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 207080 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 207146 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 207212 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 207278 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 207344 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 207410 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 207476 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 207542 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 207608 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 207674 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 207740 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 207806 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 207872 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 207938 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 208004 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [208029,208035,208038] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //