Array 1 134777-134609 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838583.1 Staphylococcus sp. HMSC34C02 Scaffold265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134776 36 100.0 30 .................................... GAGCGCTTTTTTGACGAGTTCTTCTACACT 134710 36 100.0 30 .................................... CTTTTATCTTGCAGGTTTATTGAAGATTTA 134644 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GTATAAGTGAAACATTCAAGTTTGGTGTATGGAGCGATACGGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACAGATAGGAGTGTTAATCGTGTTCGACCCATGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACTTCTTTATACGATTAGATTGCTCTACTTTCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACTTGTTTTTGAAATTCGAAATAATCGTATTGGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACACGTGACTAGTAACACGTTGCACTTCTTTTGTTTTAGTACTCTGTAATTTTAGGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAATTTTAGGTATAAGTGAAACTCTTTAGTGCCTTTTCGTTTTACTATCAAA # Right flank : CACTTGAATATAAAGATTTAGCAAGTTTTGTTTTAGTACTCTGTAATTTTAGGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTACTCTGTAATTTTAGGTATAAGTGAAACTTATTGAAACTTACGAAGGTATCTCAATGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACAGTGCAGGAACGGTTAAACCAATGTGGTTAGTTTTAGTACTCTGTGATTTTAGGTGTAAGTGAACGATGCATTGATGCTACACCGCAAGATTGAAGTTTTAATACGCTAGTACTTCAGTCACAACTATTTTAAATAGTAATTATTAAGTACTATTACTTTCAAATTATTTGATTTAAGTGATTATCTCTATAATTACGCCGATCCATTGTTACTTTCAAATAATCCATAATATTGAAATCAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 135234-135000 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838583.1 Staphylococcus sp. HMSC34C02 Scaffold265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135233 36 100.0 30 .................................... AGATAGGAGTGTTAATCGTGTTCGACCCAT 135167 36 100.0 30 .................................... TTCTTTATACGATTAGATTGCTCTACTTTC 135101 36 100.0 30 .................................... TTGTTTTTGAAATTCGAAATAATCGTATTG 135035 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : TTTCATATATGCAACATTGTAATCACAAATTTGAATTGAAAATTAAAAATGAATTACTGCCTAAAAGCATCAATAAATATTTAAATCAACAATCGTTGAATTAATTACTTTGCTATAATTAACATAATAATCTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTGAGATACCTTTTTATAAACTAATTCTTTTAGCGATTTTATATTGCTAGAGGTTTTAGTACTCTGTAATGTTTTAGTACTCTGTAATTTTAGTATAAGTGAAACTGCCATATCTACAATTAAAACATCGAGTAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAATTTTAGGTATAAGTGAAACATTCAAGTTTGGTGTATGGAGCGATACGGT # Right flank : ACGTGACTAGTAACACGTTGCACTTCTTTTGTTTTAGTACTCTGTAATTTTAGGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTACTCTGTAATTTTAGGTATAAGTGAAACTCTTTAGTGCCTTTTCGTTTTACTATCAAAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACGAGCGCTTTTTTGACGAGTTCTTCTACACTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACCTTTTATCTTGCAGGTTTATTGAAGATTTAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAACCACTTGAATATAAAGATTTAGCAAGTTTTGTTTTAGTACTCTGTAATTTTAGGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //