Array 1 7233-8066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMM010000073.1 [Clostridium] scindens strain DFI.4.63 LPJBCDHE_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 7233 33 100.0 34 ................................. TACTACAGTAGTTAGCCATAAGGCTTGACTATAC 7300 33 100.0 34 ................................. CAAGCGTCACTATCGTATACAGCCCAGCCTCCCA 7367 33 100.0 34 ................................. CCGCAAAGGATGCAATGGACAAGTTGGCCGACGG 7434 33 100.0 34 ................................. GGCTGCCGGCATGCAGGCCATGCAGGGCCTGACA 7501 33 100.0 33 ................................. ATCCAGTGTTATTTCGCCTCTGCCACAAATACC 7567 33 100.0 33 ................................. CGCTTGAAGGATGGAATACTGATCGTCTTGGAT 7633 33 100.0 33 ................................. CATAATAGATTGCAATATTTCATAAAAATACAA 7699 33 100.0 35 ................................. GGATATTGCTGATAAGTAGACTTACAAGCATGAAC 7767 33 100.0 35 ................................. CATCATTCGTGATTTGAAAATGCGCCAGCGCCATT 7835 33 100.0 33 ................................. TTATCCAAGCGTAGACGATATATGCCTGATCCT 7901 33 97.0 33 .....T........................... GTGTCATTAAGATAGGCAAAGTTTATAGAATCC 7967 33 100.0 34 ................................. TTGGATATGATCTATTAGGTCCTGATAGTTTTTC 8034 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 99.8 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAGAAATGATTGTAAGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGAAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGAGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TTTTTTGGCTGTTACGGAATGAGGATCGGGATAGCTTCCCTCTCGAGGTAAAGTGGATTGAAATTCCTGGTAACTGGTGCCATATGAAAAAGATGTTAATGAACTTCGCGGCCAATACATGATATATCCTAAAATACATAAAATCCTTTGTGAAAAAGGTTATGCTGTAAGCATTGCTTCCCTTAAGATTATTATGCAAAAGGAAAGAGCACGGATGTATGAGCATAGGAAGAAAGCAAGGAACAGTCTAAATTTATTCAGAGAAAATCTTTATGTCAATTAATTTATAAAAAATATAGAAGATGTTATAACGATACCTCAAAACAATATGAAGAAGTATTGAAAGAATATCCTCAACTAGGACAAATATATTCTTTGGTTAAAGATTTTTACAGTGTGATTTTTTCCAAAAAGCCAGAAATATTAGATGACTGGATAGAGTTTGCTCAAAAATGTGATATACCTGAATTACAGACATTTCTTGAAGGATCCTTTCGAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 160140-161644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMM010000001.1 [Clostridium] scindens strain DFI.4.63 LPJBCDHE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 160140 33 100.0 34 ................................. TTACGGACCAAAGTAGCCCCGGAACTGGATGCGT 160207 33 100.0 33 ................................. TCAGATATGTGGATATCTTCACAAACTTATTCA 160273 33 100.0 34 ................................. CAGGGTAGAGAGGGCGATCAGGCACGCATTCGCG 160340 33 100.0 34 ................................. GCACAGCATTACGTGTGCGAGGGAGAGACTCAGT 160407 33 100.0 33 ................................. GCTCTGATATATACTTCTGTAGATAGTATCGTG 160473 33 100.0 34 ................................. ACCTTCCTATCAAGGCGGTCCCGATGCTCGATCC 160540 33 100.0 36 ................................. AGTAGGAGGATTTATTTTATGGAACAGATTATGAAT 160609 33 100.0 33 ................................. CGGGAAAAGGATATACAGATCATTCACGTCCGA 160675 33 100.0 34 ................................. TCCACGGATGTTGTACCACTGCTCCGGTTCTACC 160742 33 100.0 35 ................................. TCAAAATCAATCGTGACATTGTTGATCAGCACATC 160810 33 100.0 33 ................................. ATTTATGTTGCACTCTGGGGGCTCGTCCCCTTG 160876 33 100.0 33 ................................. ATTTCCCTGCTGTCCCCATGGGAAGGAATATCC 160942 33 100.0 35 ................................. AGACTCAGAGAAGAAGCGGGAGGCTTTCCGGGAAG 161010 33 100.0 37 ................................. CTTGTCAGATCATGGTTATACTTCTTCACCCTTTGTC 161080 33 100.0 34 ................................. TCTAGTATGCTGATAATCTCATTGCAGATAATCC 161147 33 100.0 34 ................................. CATGATCTGGCAGGGTATATCACTAAGACGCCGG 161214 33 100.0 33 ................................. TGAGGATAGGAACAGATTCACAGGGTATAAGTA 161280 33 100.0 33 ................................. TGAATACATCCCCTCGATCTCTTCGAGTATCAG 161346 33 100.0 33 ................................. GATTGGAAGCACTGCTTCCTTTCCTGCTTCTCC 161412 33 100.0 33 ................................. GATAAAGGCAATGTGCAGACGGCCACGCAGATA 161478 33 100.0 33 ................................. CAATGGAATGGGGATTGATGTAGACGCATTATT 161544 33 97.0 35 ....................T............ AGACTTAATAAGAATATTAACTTAAGGACGAAGCA 161612 33 97.0 0 ...T............................. | ========== ====== ====== ====== ================================= ===================================== ================== 23 33 99.7 34 GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATTACAAGATATTCTGACGCAGGGGTAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATAAATTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGTTATCAGAAAGGCTTATCAAAGTCTTGGGAAAAATAAAAAGTAGTAGAGGAAATTTGAAGATTAGATAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAATGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : CAATGGAATGGGGATTGATGTAGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 8964-12028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMM010000078.1 [Clostridium] scindens strain DFI.4.63 LPJBCDHE_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8964 32 100.0 33 ................................ TTTCGCAACACGCTCATTTATTTTATTGCTCAA 9029 32 100.0 34 ................................ GCATCTTGTGTGGATATACACGGCACTTAAGCCC 9095 32 100.0 34 ................................ TTAATGTAAGGTACGAAGGAAAGGGAGGATTTTG 9161 32 100.0 35 ................................ CCGCAAAGGATGCAATGGACAAGTTGGCCGACGGG 9228 32 100.0 34 ................................ TTACATATTAGGAGAACACTGGATTTTGTTCGTG 9294 32 100.0 33 ................................ TGCTACCAGCAGAATGTACAGCCAGCCGTCAGC 9359 32 100.0 34 ................................ TTCTCGCATCTATAGCGCTTATGTTCTGTATGCG 9425 32 100.0 34 ................................ ATATTCTTCAACAACAACGATGAAGGAACGAGTG 9491 32 100.0 34 ................................ ATCTCCTGGAAGTGCCCATTTAAATGGTTTTACT 9557 32 100.0 34 ................................ TGCAGGTACGAGTCAGAGATCGAGCAGCTTTGCA 9623 32 100.0 34 ................................ TGCTGTCGGAGCCGGAATGTACGCCGCCCACGAG 9689 32 100.0 33 ................................ CGTTATGGAGGCACCAAGCGGAAGAGGAAGATC 9754 32 100.0 34 ................................ TATTGCTCATAAAATGGGAAAACAGCATACAGCA 9820 32 100.0 34 ................................ ACCTGGCTACGCAAGGAGAAGTTTGTTACATATA 9886 32 100.0 33 ................................ TACGTCATATATCAATGAGTTGCCGCCTTCTGT 9951 32 100.0 33 ................................ TGTTACTTACCAGTTCTCAAATACGGAATCTGA 10016 32 100.0 35 ................................ TCTCGCTGAACCTACAGTTCTGCCACAATATCATA 10083 32 100.0 35 ................................ TCTATGACGATATATGGAAAAAGCCTGAATCCAAG 10150 32 100.0 34 ................................ TATTTAGTTGACCAATAAAAATTATATACAACAC 10216 32 100.0 33 ................................ GCTCTATGCCAAGGATCAGGCATATATCGTCTA 10281 32 100.0 33 ................................ CCGCCAGAACTTGCATATGTTCGGGCTTGCCCG 10346 32 100.0 34 ................................ ATCTGACGGCCCTAGAAATGTCGATGGCAGGGCA 10412 32 100.0 35 ................................ TCTGCTATCCGCTTCCTGGACGAGCGCGGGCTTTC 10479 32 100.0 33 ................................ TTTAAGCACCTCAGATAGCGTATGCCCCGAGTG 10544 32 100.0 33 ................................ CTCGTATCCCTTTATGGTTTTCTGCAAATCTGA 10609 32 100.0 33 ................................ TGTTGTATCAACATCGTGGTCGCAATAGAACTC 10674 32 100.0 35 ................................ AGTTCTTCGCCCTCCTTAATGAGAGCTTCGATATC 10741 32 100.0 33 ................................ TATTTCTGCACATTCCACATGTTTTCATATTGC 10806 32 100.0 36 ................................ TCGAAAAGGCTCAATCGCCTCCACCGGGTTCCCGGC 10874 32 100.0 33 ................................ AATAAGATCCACAGGGACATCATCGAATACAAT 10939 32 100.0 35 ................................ TCTCCAGGTATCTTCCAGAGGATACGCTGGAGATT 11006 32 100.0 37 ................................ ATAAAGGGAATGTATGATAGGGGAAAGTTAGAGGAGT 11075 32 100.0 35 ................................ TTACTATTGTGAGCTGGACTGATGGTACAGACGAT 11142 32 100.0 33 ................................ TGTCTTAACTTGCATTGTCTCTGTAACAGACGC 11207 32 100.0 33 ................................ TACCAGCAGGCGAAGAAACTCGGAAAAAAATTA 11272 32 100.0 35 ................................ GCTACCTACAGCCTGGCAAAGGAGGGGCTGGATAT 11339 32 100.0 34 ................................ ATTGGCGGCACCTTAGAAGGCGGACGCAGGAAAG 11405 32 100.0 33 ................................ GATACATGATTGACGGAAGGGCATTTTGCGTAG 11470 32 100.0 34 ................................ CGTTGATGCAAGCGGAGGCGTCTCTCCTCTTGCT 11536 32 100.0 34 ................................ AATACAGAGGTGATGCAGCAGACCGCTGTTGATG 11602 32 100.0 34 ................................ CTATAGCATGATGCGTACTATGCTCTCCAGCGAA 11668 32 100.0 33 ................................ AACGAGGATTTGCAGAAATGGGAACTAAAAAGA 11733 32 100.0 34 ................................ AAGATAATCACATCCTTTCTGTGCGACAGCGCAC 11799 32 100.0 34 ................................ GCAGATGCAACAGTCTTTGTTACGCATTGTGCTA 11865 32 100.0 33 ................................ GGTACATTTCCAAAGCCTTAATAATCGTATCTT 11930 32 100.0 35 ................................ ATGAACTCAGCACTGATATGTATTGTCCTGTCACG 11997 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 47 32 100.0 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Left flank : GGATGCGTATCCGCCATTTTTATGGAAGTGAGGTGGCTTTATGCTGGTATTGATTACATATGACGTTAATACAGAGACAGCGGCCGGTAGAGCAAGATTAAGGAAGGTTGCCAAGCAATGTGTCAATTATGGAAGGCGTGTGCAGAACTCGGTCTTTGAATGTATTCTGGACAATGCACAGTGTGTTATGCTGAAATCTACTTTGATGGAAATTATAGATGAAGAAGTGGATAGTTTGAGATTTTATTATCTGGGAAATAAATACAAAACGAAAGTAGAGCATGTGGGAGTCGATAAAGGGATTGCTGTGGATGAAACATTGATTCTGTAGTGCGAATATGAAGCACACATGAAAATCCCGGGAGATTCGCACCAAAAAAGTTGTACAAAAACTGTAAGTTATATTAGGATATTAATTAAATATCAAATCATATCTAAAGAAAATGTAATTTACTACAAAACATATTACTATTTTCTTTTGAAATTTGGATATATTTGCT # Right flank : GGTACATTTCCAAAGCCTTAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : NA //