Array 1 648838-647530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANOV010000001.1 Amycolatopsis granulosa strain DSM 45669 Ga0197595_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 648837 29 100.0 32 ............................. CTGGAACCACCCACTTAACAGGCGGGCGCTCT 648776 29 100.0 32 ............................. CTCGCGGTGATCCGATGGGTGGAGGCGCGGGA 648715 29 100.0 32 ............................. ACACCTACTCGTGGGAAAAAGTCGCCGAGCAG 648654 29 100.0 32 ............................. GCGGGGTGGATGGCGAACTCCCCGGACTTGAT 648593 29 100.0 33 ............................. GGCAACGGTGGCACCCCCACCGCCGGGGCGGGC 648531 29 100.0 32 ............................. CTCGACCAGCTCACCGACGCGTTCCTCGGCAA 648470 29 100.0 34 ............................. GACGGCTCTGGCTCGAAATCGAGGTGACCAGGTG 648407 29 100.0 32 ............................. AACACGCCGCGGTCAACCAACGTGGCGATCGC 648346 29 100.0 32 ............................. GCGATGCTGCGGAACAGTTTCCGGAGTGGTTC 648285 29 96.6 33 .............G............... AACCAGTTCGGGCTGCTGGTCTTCGGGCTGCTG 648223 29 93.1 32 ............GG............... GTGGCCATCGCGTCAGCCGACTTCATCCGCAT 648162 29 96.6 32 .............G............... TGGGCGGCGTAGGCGTCGGTCGCGTTCACCGC 648101 29 93.1 32 .............G..........A.... AGGATGCCAGGCTTCGGGTCGGTTGAGCTGTA 648040 29 96.6 32 .............G............... CTCGGTCGCCTCGTCGAGCAGCCGGGCCAGTT 647979 29 96.6 32 .............G............... CAAGTCGTCTCCAATCTTCCGGCCGGTGTCCG 647918 29 93.1 32 ............TG............... CGGCGCTGGGCCTCGCGGAAGCAGACGGTTCC 647857 29 96.6 32 .............G............... TGCTGAGCTGCGGCCGGGGTGAACAGCCATCA 647796 29 93.1 32 .............G....A.......... CACCTGTCGGTATCCCAGTCGTATTCGGCGTG 647735 27 93.1 31 ............--............... AGGTCGCCTCCCACATGGTTCAGAGGCCGCC 647677 27 82.8 32 A............G.....A..--..... GGTGAATACCATTGGGCAAAAGCCCGGTTCCG 647618 29 93.1 31 .....T.......G............... GATCGCCCAGCAGTTCGCGGACGACCGCGTG T [647592] 647557 28 86.2 0 .....G.......G-..T........... | ========== ====== ====== ====== ============================= ================================== ================== 22 29 95.9 32 GTCTTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : ACCGAGGACACTGACATCACTGCCGATATCGTGCAACTCTGGGACTACGATGGAACTCCTCTGCCCAGCGGAACATCCTACGAGGACGAGCTGTGACAGTCATTGTGGTCGCCGCTTGTCCGGTAGGTCTCCGAGGCCACCTCACCCGATGGATGTTGGAGATCTCACCCGGCGTCTTTGTCGGCACCATCAACCAGCGTATCCGTGCACTCATGTGGGCGCGGGTCATCGACATGGTCAAAACTGGCCGGGCGATCATGGTGTACCACGCACCCAACGAACAAGGCCTCGCTTTCGAAGTCCACCAGCACGACTGGCAACCCATCGAGCACGAAGGCATCCACCTCATCCTCAGGCCCAACACCACACTCGGACCCAACCACGAGCCGCCAGTCAAATCAGTGGGCTGGAGCAAAGCCAGCCGCCGCCGACGCTACGGCAATCGGTGATCAAAGCCAAAGAAACACCGTTTTGATCCGCGTTTACGCTGGTCACCAAGT # Right flank : GCGGTTACGTCGTGCAGCGGGGCATTCGTCGGGCTCTCACCACTCCTTCTGGACAAGTACCTCATAAGGGCGGTGATTGTCCGATCGGCCAGGCACCCTGACGTGTGATTCCAGTCGATTTGCCCGGATGCATAGACGAGGGCTGAATACGGTAGCCACTGTGTGGTCACGGCTGATGGGATTGATGGCGACGATCTGTGTCGCTGGTGCGTGTTGGGCGGCCGCGAGCACGTTGCAGGTGACCGTTGAAGGTGAGACGCCGGTGCTGATCTGCGGCTCGGCTTTCGTTCGACCGCAGCTTACGGGGTTGGTCAACGGCAATCGTGCTGTCGGGGTAGGGGCGCAGGTCTTGTCAAAGCCGGTCTATCAGGCAAGTGGACATTCTGTAGTGGATGCGGCTGCGCGTTCGCTCTAGCTGGTGAACGGTGTCGAGGACCTCTTCTGCAGAGTGTATTCCGGAGGGACCGGCGCTGCTCGACCCTAAGCCGGGCCAGGTGCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : GTCTTCCCCGCGCGAGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 658811-659509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANOV010000001.1 Amycolatopsis granulosa strain DSM 45669 Ga0197595_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 658811 29 100.0 32 ............................. GGGTGGAACGGGCATGTCGAAGACGAAGCTCT 658872 29 100.0 32 ............................. AGGTCAACCCTCACCTTGTAGCCAAGATCGCG 658933 29 100.0 32 ............................. ACCTGCCGGATCGCGGGCAGCAGCTGCTGGAA 658994 29 100.0 32 ............................. GTGCCGCCCCCCTTGAGCACGATGCCGATCGT 659055 29 100.0 32 ............................. CGGCTGCCCAGTCGTTCACGTCTCGGCCCTTT 659116 29 100.0 32 ............................. AGCAGGCCGGGCTTCGGGTCGGTTGAGCTGTA 659177 29 100.0 32 ............................. GGGATCGGCAACTTCGCCGGCGCGATCCGGGA 659238 29 100.0 32 ............................. CCGCCGACGATGCTGGCGTCAGCCCGCTGGGT 659299 28 96.6 32 .....-....................... GGGCTCATCGTGCAACTCGCTGTGTCGAGGCT 659359 29 100.0 32 ............................. TCGTAGAGGTCAGGCGGGATCGCGAGGCCGAG 659420 29 89.7 32 ..........G...............GT. GTACGATTTCGGAAGGTCGTTCGATATTCGCC 659481 29 82.8 0 ...........C.........A.CA.T.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGATCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CAGCCAGCACGCCAGAAAGCGAACATCAGCACTTCCTCCCGGCAGGTCCTTTCCGATCAGATCCAAAGCTTGACGAGAAACCCACCGGTCAACCAATAACCCGGCGACCGTCGCGCTGTCCATCAAATGCAGCCATAACGGCAGCCAACCCGTCAGCTCGCCACGATCATTGGTAACCGACTTTGCCCAAGAGGACAGCCATGCCGCCTTACCGATTGCATCGGCAGTTAAACCTCGCACCACATGGGCCATGATCGCGGATACCGCGCAAACCGTTACTCCGCGCCCGGGCGGGATCTCCTTTATCGACACTACGAACGAACTCCGCTATGCCTGCGAGTACCGGCGACCCTAGAACACCAAGCGCAACAGCCGCCCTACGAGGTCCACCTGCTCGCTAGAAGAGGACAGGCGCCGCAACCGTCCTGATCAGCTCACCCGGACGACGGCGAATGCCACAGTAACGCCGTTTCAGTTGATGAGTATGCTGGTCAGGTAGG # Right flank : CAACGTTCGGCGCGACTCAGCTCACAGTCGCAGGTGTCCCCTTGTAGGCGGGATAGTCCGACGCGAGCCAGAAACCTGTCCGGCACCTCGTCGTGCTCCCATCGAGCGGGGAGAGTTTCTGCGTAATACGTTCCCCGTATTTCCGCTTCCGGTGCTGCCTGCGCGAACAGAAGTGATGTCTTAAGCAATTGACCTAGGGCTTTTTCGTTCTCCATTCAAAGAATCGCGAAGAAGAGGTCCAGCGACCTGCCGGCAACGAGCCGGTGTCGGCTAACCCTAACCAACAAACACTCCATTTTCCGGTAGTTGTCCACGGTAGCAGCCAGTCCGCCAGGCCACGCGAGCGACGACTTCTCATTCCGCAAACCCTTCCGACACTCCATCCCCATCGGCGCCCGTACCTCAAGGACAAGCGACAGCTCAGCCCCAGGTTCCCGCGCGATTCCGCCTCAGCACGCCACCAGTTCGGCACGACCCGTATCCATTCGGACGGGGCCGCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //