Array 1 9472-8363 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAN01000012.1 Moraxella lacunata strain CCUG 4441 CCUG_4441T_0000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9471 28 100.0 32 ............................ AATTATCACTGGGTTTGTTTTGGACGGGATTA 9411 28 100.0 32 ............................ AATACAGGAATGGCATCGCCTTGATTGTAACC 9351 28 100.0 32 ............................ AACAATGCTTTGCAATTATTCACGCACAATGA 9291 28 100.0 32 ............................ TGTTCTTGTTCCTGCTCTTTATTGGCGACATC 9231 28 100.0 32 ............................ ATTATCCGCCTTTACGCAAATGCCAATATCAG 9171 28 100.0 32 ............................ AACTGGGGCAAACCCTACAAGCGATAACCCCT 9111 28 100.0 32 ............................ ATTCTTGGGCTTTACAGAGCGTATATCCACGT 9051 28 100.0 32 ............................ CTTACCGAGTGATGACCGTTGAGCAGTATTTA 8991 28 100.0 32 ............................ TATCGGTCGGTCGGTCGGAACGGTCTGGGGGA 8931 28 100.0 32 ............................ AAGGTTGATTTGTGCCATTCTGACACAGTGAT 8871 28 100.0 32 ............................ TAGTCCGCAGGCGTTGGCGTACTCATTAGCAA 8811 28 100.0 32 ............................ AGACGGTGGCAACAACCCCAAACACATGCAAG 8751 28 100.0 32 ............................ GTTTTTAACAACAACGTTTTTTGCCCAAATGT 8691 28 100.0 32 ............................ GTTAAATATGACTGCGTCGGTGTCATCGAGTG 8631 28 100.0 33 ............................ GAGAAACCGTCATAATATCAATAAAATATAAAT 8570 28 100.0 32 ............................ TACATAACGACCCACCAGTTTGATATTGGTGT 8510 28 100.0 32 ............................ ACCAGCTCACGTACAATCATCTCGTAGTGGTC 8450 28 100.0 32 ............................ AAGCAGTTCCATGACGGTCATCGCCACCGCCA 8390 28 85.7 0 ..C........T.C..........A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCCTTATCGCATAGATAACTTAGAAA # Left flank : CGATAGCGGACGTGGGCGAGCGTGCGACAGGCTATGTGGTGGTAGAACGCCAACAGCGAGCGGATTTACAAAAACAAGCCGAGCGATTTGCCGAGTTTAAAAATCTGACGGTGGAGCAGGCGTTGGAGCATTGTTTGGCGTACAAAAAACAGCCAAAGGCGTATCCGTTTATTGAACTGTTTAGCCAAACCAATCAAGTGCCGTATCGGCTGTATGTCAAACAAACGGTCGTGGATAAGGCGGTGGACGGCGAGTTTACGGTCTATGGCATGCACAATCAAGGCGGAGCGATGACGGATAAGGCAACTGTTCCGCATTGGTGATTGAGTTTGATTGTGCTAAAATAAGGGGTATGATACAGGTTTATACTCTTTATTTTTTGACTATTTAAAAACTTGTTAACAATCAATCACTTATAAAAAGGCAAAAAAGCATTGGGTAAATGCCCAAAATATGGCTTTAAGTCTTGATATAAGTGGGTTTTATGTTGTATAATTCTA # Right flank : TTGTATTGAGCTGTAATTGCAATACAACCCAATACAATCCCCACCACACAGATAGCTTACAAGGCAAAAAAATGCTATAATAACCCACATTTTTCAAAGAATTAGGCGTATGCCAAAGGATTTTTATGAGCGAGCAACTTCCTACCAACGACTACAATGCCAGTAGCGTGCGAGTTTTGCGTGGACTAGAAGCGGTGCGAGTCCGCCCTGGTATGTACATTGGCGACACCGATGACGGTTCGGGCTTGCACCACATGGTGTTTGAGGTGGTGGATAACGCCATTGACGAGGCACTCGCTGGGCATTGCGATGAAGTGCTGGTTACCATTCATGCCGATGAGTCGGTGTCGGTCATGGACAACGGACGGGGCATTCCTGTGGACATTCACCCCGAGGAGGGTGTGTCGGCAGCCGAGGTCATCATGACGGTGCTTCACGCAGGGGGTAAGTTTGATGACAACAACTACAAGGTCTCAGGCGGTCTGCATGGCGTGGGCGTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTATCGCATAGATAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 13118-12429 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAN01000019.1 Moraxella lacunata strain CCUG 4441 CCUG_4441T_0000019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13117 28 100.0 32 ............................ AGTATTTTGATGCCTTTATGAAAGAGAACCGC 13057 28 100.0 32 ............................ ACGCCTATGCCGACCAAATAGGGGCAACAGCA 12997 28 100.0 33 ............................ ATAATCTGACAATTATAATTAGCGGCAGATTCT 12936 28 100.0 32 ............................ TGATTACGACATCAGACGCACTGACCCAATGC 12876 28 100.0 32 ............................ AAAACATATGTTTGCGTTGAACCGAAAGGCAA 12816 28 100.0 33 ............................ CACAACCACAGCCAAGCCCACAGCCAAGCCCAA 12755 28 100.0 32 ............................ TCAGACGTCAAGACCCCATGTTACAAGTAAGG 12695 28 100.0 32 ............................ ATTTTTATCGCCTTATATTTTGGCTATTCTTA 12635 28 100.0 32 ............................ TGCTAGGGCAATGGCATCATCGCCTGTTAATG 12575 28 100.0 32 ............................ AAATCAAAAATTTTGAAAAAAGGTATTGGCAA 12515 28 96.4 32 ...........T................ ACTCTCGGCATTGGCGACCCACTTGGTATTTT 12455 27 82.1 0 .C........A..C......T...-... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCCTTATCGCATAGATAACTTAGAAA # Left flank : TTTGGCAGGTGTGCCGTATATCGTGGTGCTAACCAATCCTGTCTATGGTGGGGTAACCGCAAGCCTTGCCATGCTGGGCGATGTGCATATCAGTGAGCCAAAGGCAATGATTGGCTTTGCAGGTAAGCGTGTGATTGAGCAGACCGTGCGTGAAGTGCTTGATGAGCCGTTCCAACGTGCCGAATTTTTGCTAGACAAAGGTGCAGTGGATATGGTGGTACACCGCCATGAGCTTGTGGATACGGTGTATCGACTGCTTACCAAGATGATGAAATTGCCGAATGTGGGTTGATTTTATAAACCGTCCTTTGGGGCGGTTTTTTGTCGCCAAAATTTATGCTAAAATGCGAATGTGGTAAAGGTTTATACCCTTTATTTTTTGATTATTTAAAAACTTAATAAAAATCAAACATTTATAAAAAGGCGAAAAACCATTGGGTAAATGCCTAAAAATTGGTTCTACGCCTTGATATAAATGGGTTTTATGTTGTATAATTCTA # Right flank : CCACAAAACCACCCCAAAATTCCATTTGAAAAAATCCCCAAAATCATGCACAATACCTCAAATTTTTAACACCAAAAACACCCATGAACACCCCCCAAACCATCTCCGAATGGCTCAATTATATGGGCAATATTCACGTCTCCGCCATTGATATGGGGCTTGACCGTGTGCTACCTGTCGCCCAAGCGTTGGGCGTATTAAAAGACGACTTGCCACACCGCCCTTATGTGTTCACAGTCGCAGGCACCAATGGCAAAGGGTCGACTACCGCTCTCATCAGCGAGATTTGCACCCAAGCTGGCTACAAAACCGCCCTGTATCAATCGCCCCATTTAGTTAGTTTTAACGAACGCATTAAAATCAATGGGACAGATATTAATGATGAATTATTGATAAAAGCCTTTAACGCCTGTGAAAAAGCACGCACGGACTGCCATGTTTCTTTATCATTTTTTGAAATGACGACATTATCGGCATTTTGGATTTTTAAAGAATTAAAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTTATCGCATAGATAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 12327-14591 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAN01000062.1 Moraxella lacunata strain CCUG 4441 CCUG_4441T_0000062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 12327 36 100.0 27 .................................... TTCCTTTTTTGGCTCAAGATAATCACA 12390 36 100.0 27 .................................... ATGAAGTGGTTACCCACTGCTACTTGA 12453 36 100.0 29 .................................... CCATTGTTTCCCCAATCATGTTAGCAATG 12518 36 100.0 27 .................................... CTGTACTGACGGTACGCCAATCCTGCA 12581 36 100.0 27 .................................... AAAAGCCCCAAATCAATGCAGGTGGAT 12644 36 100.0 27 .................................... GTGTGGATGATTTGATAATCATCAAAG 12707 36 100.0 28 .................................... ATCAGTTTCTTCATCAATGGTAACTGGT 12771 36 100.0 28 .................................... ACAAATATCCGTGCTTTGATGGGTGCAA 12835 36 100.0 27 .................................... GTATTGCTTGTTATGGGTGCTATTATA 12898 36 100.0 27 .................................... GTGAGTGTAAAGAGCTTGGCACGTAAA 12961 36 100.0 28 .................................... AGGTAATTGTTTACACCTGTAACCGTTG 13025 36 100.0 30 .................................... ACAGATAATCCATATAGTCCAAGAGTTCGC 13091 36 100.0 26 .................................... ACCAATACGCCAGCATATCAAGCATA 13153 36 100.0 29 .................................... AAGGTTAAATGGCTAGTTTTTGATGTAGA 13218 36 100.0 25 .................................... CGGCTTGCGTCCCCTTGTAGCTTAA 13279 36 100.0 28 .................................... GGGCGAACGACTAGATAGCCCAAATCGT 13343 36 100.0 28 .................................... TAAAGGACTGTGTAGGTTTGTCCACGAT 13407 36 100.0 29 .................................... TAAATCACCCTTGGGTAAGATTGGCACCT 13472 36 100.0 27 .................................... TAATGCATACAGGCGTAATGGGTTGAA 13535 36 100.0 26 .................................... ATACTTTTACCCCCCCCCTGAAAGCC 13597 36 100.0 28 .................................... GTGTAAATCTCTTTTTATGTAGTTCTAC 13661 36 100.0 30 .................................... ATTGTTGCAATCGCTTATTTGATTGGTGCT 13727 36 100.0 30 .................................... AAGCTCAACCAATTCACGATACACGCACCA 13793 36 100.0 26 .................................... TGCGGTGTTGGTTTTCACCCTTTACC 13855 36 100.0 26 .................................... TGCGGTGTTAGCCATTGCCACCGAGC 13917 36 100.0 28 .................................... ATGATGATAAGATTCTACTGGATATCTT 13981 36 100.0 27 .................................... CACCTCTTCTGGCAAGGCATTGTCGGC 14044 36 100.0 28 .................................... AAAAGTATTTTCGCTACAATCACTCGCC 14108 36 100.0 34 .................................... AGCAAGCGTTAAAACGATATTTTTTCAGTCGTTA 14178 36 100.0 28 .................................... TTTTAGTTCGTCTTGATTGGATAATAGC 14242 36 100.0 27 .................................... GCTTCTGTGCTTGTTGGCTTTGCCGTT 14305 36 100.0 26 .................................... ATTCAAATGGATAAAATTATGAAAAC 14367 36 100.0 26 .................................... TTAAATTATGTTGCTATGGCTCATTG 14429 36 100.0 28 .................................... GGGGGCAATGCCCTGCTCCTGTTACTCA 14493 36 100.0 27 .................................... AAGTGAAAACCAAAGGTAAGCTAAAAG 14556 36 91.7 0 .................................TTG | ========== ====== ====== ====== ==================================== ================================== ================== 36 36 99.8 28 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : TGGTTTTGATGTTGCCAAATTTTGACATACAAGCAAATGGAGAAGATGTATGATAATCGTCAGTTATGACATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGACAGGTTGCAATATTCGGTCTATGAAATTCAAAACAGCGAACGCATTTTAAACATCATCACCGAAAAAATAAAAGCAGAATTTGAGTCTTTATTTACAGGAGCGGATAGCGTCATTATCTTTCGGTTTACAGAACGTGAAGTATTAAGATTTGGTCATGCCAAACATCGTAATGAGGATTTGTTAATTTTATAAAAATCCTTGGCAAAAATGATGAGGTTTGTTATAATAAGAGATCTAAATCACACCCAAATGTTTACTTTACAAACCTAAGTCTTAATGTGTGATTTATCATGTTTTGGCGGTAAAAATGATGATTTTTTGTACAAAAAACTTGCTAATTTCTCAAAAAATCATTAAAAATACCCCAAAACGG # Right flank : GGCGTTTAAGATGATTAACCCCACTGCCTGTCCCGAAACGCTACTGCCGTGTCTTTGGCTTTTTTGATGGCAAGTTTGCGGTTATGACTGGCGAAGAGCTTTAACTGCCACAGTTTTTCTTGGTATAAGGTCAGATGGTCGCTTGGGTGCATGCGATTGATAAGGCGTTTGCTCGCCAGTACCGCATCAGGTGAGCGAGTGGCAATCTCATCGGCTAGGGCTTTGGCACGTGTCATCGGTTCATCATCGAGATGGGTGATGAGTCCGTAGTTGTAAGCGGTCTGGGCGTCAAGTAGGCGGGCAGACATGGCAAGCTCTTTTAGCCTATCCTTACCGATGTCTTTGGCAAGACGGGTCAGCCCCATGTCAGCGACCAGTCCCCATTTGGCTTCAAGTACCGACCATGTCGCCGATGGGTGGCTGATACGCACATCCGCCCCCATGGCAAGCTGTAACCCCGCCCCAAGGCACACGCCATTAACCACGGCAATCACTGGCAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //