Array 1 5217-6572 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZSC01000027.1 Neisseria meningitidis strain Neisseria meningitidis isolate B085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5217 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5283 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 5349 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 5415 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 5481 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 5547 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 5613 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 5679 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 5745 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 5811 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 5877 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 5943 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 6009 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 6075 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 6141 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 6207 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 6273 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 6339 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 6405 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 6471 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 6537 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //