Array 1 2244529-2243097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2244528 29 100.0 32 ............................. GGCGAGGCCGAAGGTGCGGAAGTCCAGGCGGG 2244467 29 100.0 32 ............................. TGGGGGCGCGGCACGGAGGGCACCGGGGCCCA 2244406 29 96.6 32 ............................T CCGTACCGGGATGAGGACTGGGGTTGGCTGCG 2244345 29 96.6 32 ............................G TCGAGATGTGGGTCCGCATCATCGCCTGGTCC 2244284 29 100.0 32 ............................. CGGTACCTCGTCTACGTGGCGCACCGGTACGG 2244223 29 100.0 33 ............................. GTGAACTGGCGGTAGGGCGGGCCGACCTTCTCG 2244161 29 96.6 32 ...T......................... GACCCCAGGTCCTACGGGATCCGGTACGTCGA 2244100 29 96.6 32 ............................T GCGGGTCGACTCCGACCAGGTCCCATCGACCT 2244039 29 96.6 32 ............................T TCCAATGGGTCGGACGATTCTCAAAGCGGCGG 2243978 29 100.0 32 ............................. ACCACCCGCGACCAAGGCGGCCCGGTGGCCCT 2243917 29 96.6 32 ............................G GCGTCCTGAACGTGCACAAGCGGACGGTGTGA 2243856 29 96.6 32 ............................G CGGCGTCGCCGCCGAAGAAACGTGCTCGGCCC 2243795 29 96.6 32 ............................G ACCAGTGCGGCCCCCGTGGCACCCACCAACAA 2243734 29 100.0 32 ............................. CGGCCGCACCGGTCGCACCGGCCGCAACCTCA 2243673 29 96.6 32 ............................G GTGAAGGACTGGTAGACGTCGGCGGTGAACTC 2243612 29 100.0 32 ............................. CGCATCACCTGGTCGGTGCGGCCCTGGCGCAG 2243551 29 100.0 32 ............................. CTCGATGGTGCGTTCGCCCTGGTGCCGAAAGC 2243490 29 96.6 32 ................T............ TGCTGTCAGGGCCAGCAGGCCAATGATCTTCG 2243429 28 96.6 32 .....................-....... CGCCAGGACGCCGCCTCGGGACGGCTCGCGGC 2243369 29 96.6 32 ............................G GACGAGGGCCTCGCCGAGGCCCGGCGGCGTTT 2243308 29 96.6 35 .....................A....... AGCGTCAGCCTGGCCTGGGACGCCCCTGTCCTGCA 2243244 29 86.2 31 .......G.......A.....T...C... TGCGCGAGCCACGGCATCGTCTTGTCCTCCG 2243184 29 86.2 31 ..CG............A...........G GACACCGCGCAGGAGCTCGTTCCCGAGCGCA 2243124 28 75.9 0 CGT.GT......T........-....... | ========== ====== ====== ====== ============================= =================================== ================== 24 29 96.0 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : TGGCGGTGACGTGGTGATGCTCTGGGATGACAACGGCCGTGCCGTGCCCGGTGGGGTGGCCTATGAGGAGGAAGCGTGACGGTCATCGTGGTCGCGGCCTGCCCGGTGGGCTTGCGCGGGCACCTGACCAGGTGGTTGCTGGAGATCTCACCGGGTGTGTTCGTCGGCCGCACAACTGGCAGGGTGCGGGAGTTGTTGTGGGTGCGGGTGGTGGAGATGGTCCGGACCGGCCGGGCGATCATGGTCCATCACGCCGACAACGAACAGGGCTTGGCCTTCAAGGTCCACGACCACAACTGGGTTCCGGTGGACTTCGAGGGCATCAACCTCATGCTCCGCCCAGCGCCGGGTGCGAGGCCTGCCTCCGGTTCCCCGGAGGCAGGCGGCAAGCCGGGTTGGAGCAACGCGAGCAAGCGACGACGCTTCGGCCGCCGATGAACAGCCCGATGAAAGTGAATGAGAATCGACCAGGTCGCGCATAGAAGCGCTGGTCAGGAAGT # Right flank : ACCGTGGTCCTGCCCAGCACTGGGCGCATGCATGGTGTGTTTCCCACGCAGGCCCCAGAAAGTTGTTTCTATCGGGGTCCCAGGCGACACGAGCAGTGACCAGCCGGGGCGAAGTGTGCCTTGCCCGAGCTCTCCTCATCGGCCTCGGCGGAGTGGCTTGGAGAAGCTGGTCGACTTGGACGTGCGCGAGATTTCGGGGCCTGATCCTGCGGCCGACCTCAACGCTCAGCGGGACGTGCCCGATTGGCACGCCGGAGGTGCGGCGCGCAGGCAGAACGACGTGCCTACGTAGGAGCCGGAGGAACTTGGCGGCTAGTGAGCTGGTCTTGAAGTTCGTTTGCTGATGTCGTTGCGTGTCCGTGTCAGCGGTGGACAGTGGTGGTATGGCTGGAAAACCGCAGCAAGAGCTTGTTCTGACCGATGAGGAACGGCGGGTCCTGTATGGGTGGGCGCACCGGCGCAAGACCGCGCAGGGCCTGGCGTTGCGGGCGCGGATCGTG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2255342-2254030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2255341 29 96.6 32 ............................G TCGGCCAGGCGCTCCGCGCGTTCACGCGTGAT 2255280 29 100.0 32 ............................. TGAACCGGGCAGTCGCCTTCGCCCGAGACCTG 2255219 29 96.6 32 ............................G CCCGGCCTGTTCGGCTCCACCATCGAGGTCGA 2255158 29 100.0 33 ............................. CTGGCCTGATCAGAATCGCCCTATCCCCCGAAA 2255096 29 100.0 32 ............................. ACCTGGGACGAGCCCGCGCTGGTCCCGCCGTG 2255035 29 100.0 32 ............................. GCGCGGTACCGGCCGCCGCCATCCCGGCCGAC 2254974 29 96.6 32 ............................A CCATCGAAGTACTTCTGGAACGCGTAGTCTTT 2254913 29 100.0 32 ............................. ACGGCCCGGCAGAGGCTGTGGACGAAGTCCGG 2254852 29 96.6 32 ............................G CGGGTCAGCCACAGGGCAGCCTCAATGTGAGT 2254791 29 100.0 32 ............................. CAGGTGGCCCGGTCGCTGCACCAGGAGACCCC 2254730 29 100.0 32 ............................. GCCGCCCCGGCCGGGGAAGTGCTTTTCAGCCA 2254669 29 100.0 32 ............................. TCCGACCAGGCCGTCGGCTGGCTCGAGGTGAA 2254608 29 96.6 32 ............................G CGCTGTCCACGGACAGCGTCCCGGCGGACAGC 2254547 29 96.6 32 ............................G TCGCCGATCCTCCGGCGTGGCTGGAAGAGCTG 2254486 29 96.6 33 ............................G GTCCTGGGGACCTTGAGCTTCTGCGGCGGTGCC 2254424 29 100.0 32 ............................. TGCTGGCAGTTGCCGTGGGCGAACCAGTCCAG 2254363 29 100.0 32 ............................. CCGGAGAACCCGCGGCCGAACGATCTGCAGAT 2254302 29 100.0 32 ............................. CCGGAGAACCCGCGGCCGAACGATCTGCAGAT 2254241 29 96.6 32 ............................G AGCCACCGGGCGACCGGACCACACCACGTGGC 2254180 29 96.6 32 ............................G GCGAGAGGCTGACGTGGCATACGAGCGGGTTG 2254119 29 100.0 32 ............................. AGCAGCCCGCGCGCGACCTCGCGGCCGTCGGT 2254058 29 86.2 0 ............T........C....T.G | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Left flank : ACGATGTTGAGCAGCCGGAACTACCTGCCGGGGCGAGGTCGGGTGTCCGTGAGCCAGAAGCACGGCTCCACCCGAAGGACAAGGTGGCCGCTTGGCAACCCGAGCATCGGGATGCCGGTGAACGGACACAGGATGCCCTCCTTGCTCAGGCACGGCACGAGGATGCGGCTCATCGTGCCGTGCACCAGAAACCGATATCAGCCGATGCCCTGCGCATCCAACTCGGCGTGGGCGCGGCTCGCGCCAGAAGGCTCATCAAGATCATCCGTGCCGAGTTTGAAGAGCAGACCCGCGCCTAGCGAAGCTTCGCAACGTCCACTTGATCGCGATGATCTGCCGCGATGTGGGACGAATCGACATCGACAGCCGCGACGGCTCTCCGAGGTGCTCAACAGGTTGTCGCAGGCCGTCGGTCACCCAGTGCCGTTAGGTACATCATCCCGGTGATGCAAGTGAATGGAAAGTAGCCTGAGGTCGCGTAAAGTGCCAGGTCAGAAAGT # Right flank : ACGAAGACTCCCCGTCTTCTTCCATGAGCAGTCGTCTCCACAAAGGGAGAAGGTGATGTTGAGTCCATTCCACGCGACCGCACTTACCAGCTTCGTGACGTGGTCCGCAGCCGAACCAGTAAAAACTACTCGATGGCAGTGTCGGGCAGTTGAGTCGCTAACGGCGGTCCGCGTTCCGCCTACAGATACCTCGGGCGGTGGCCGTGGTGTTCTTGTGTTGAGGTCAGGAACTGGCGAGCTTGAGGTGTCGGGTGAGTTCGAGCGGCCTGCTCAGTGTGAACCGGCCTCCGGGCAAGCACGTGGGGCGTCGAAATGGTAGTGACGCGGTGCGTTGGCACCTCCGGTTATGGCCGCGAAGAAGGCGTTCACGGCGTGGGATCCGTTGACTTGACAGTGAGCCTGTGGCGGATCGCACGTTCGGTCGGACGCATCCGACTGAGACTTCCGTCTACCTCGGACCAGTGACACAAGCGAAAAGCGCCCAATGGTGCCGCTCTTGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5058759-5059522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 5058759 28 100.0 33 ............................ GAACAGTGCTCACACCTGTTGGAACAGATCCAA 5058820 28 100.0 33 ............................ CGTGCCTTGCCTGGCCGCGTCGGTCAGCGCACC 5058881 28 100.0 33 ............................ CTTGATCAACAACATGGTGGGGGAACCGCGGTG 5058942 28 100.0 33 ............................ CATCTACGCCGCGCTGCGCCCCATGATCGAGGG 5059003 28 100.0 33 ............................ GGTGGGGATGGACTCCACGGTGCCGCTGGCGGC 5059064 28 100.0 33 ............................ GGGGGATCTCAACCATTGGACCGGTTGGCAGGT 5059125 28 100.0 33 ............................ GCCTTCCGGCGTCGCACCGAACCGAAGGGGCTC 5059186 28 100.0 33 ............................ CGCACCTCGGCGGGCAACGCGCACTCCGCCTAC 5059247 28 96.4 33 ....C....................... GAGCGGAGCAAGCTCCTTCTCGAAGGTCGACGA 5059308 28 100.0 38 ............................ GGGGAGGAAGGGTAGAGGGGGTCACCCGAGCGCAGGTC 5059374 28 100.0 32 ............................ GTGGACCGTGGTGTACACCGCGTGCCGCCTGG 5059434 28 85.7 33 .GG.........TG.............. AGGCTGCGGGCCGACGAATTCGCGGCCGTAGGC 5059495 28 82.1 0 .........C...GT......C....T. | ========== ====== ====== ====== ============================ ====================================== ================== 13 28 97.2 33 GTCGTCCCCGCACACGCGGGGTTGGTCC # Left flank : GACAGCCAACCAAAAGATCAAGGCGCCAGCCCCCGGTAGACGACCCCGCACGGACCGCGAGACGCGCTGGAAGGCGACCCCCCCACGAACAGCAGGGGGGCCGGGGGGCAGCAGCCCCTCCGGCAGGGGGCGCGGGGGCTTGGCCCCCGCTGTGAATGCGAAACGCCCCGGTTCGCGGAACACGAACACAGGGCGCCTGGCGTGGAGCGGGTGACGGGAATCGAACCCGCCTCTACAGCTTGGGAACCCGTTGCGGCACACCAGGTAGGGCCGCTGACCTGGGCTTGAGTGCGGTCGTCGTTGGCCGCTATTGACCGCTGCTGACCAGTACTAACAGCACGTGGACAGCACGTCTCCGAGGTCCTGGCTACTTGGGTACGCCGAGCGCCTCGGGCTCGGTAGGGACCATCCGTGCCACGCTCGTACGTGCTGGCTAGCGGCCTGCCATGAAAGTGATGCTAATTCGGGGACTGGCTCGGTATCGTGGCTGGTCAGGAAGT # Right flank : CGGGTGGGTTGTGTTCTTCTCCCCCGCTGAGGGGGCTCGCGTCATCCCGTCGACCTGGCTCGCCCCAACCACGCGGGTCAAGGGGGCACCGTGAGCTCACAGACGGCTGCGCTGGATCGGCCCCCTTGACGCGTGTGGTTGCCCTCGGGGAGGTCGACGGGATGAGGCGAACCCCGGCCCACGCTGTCACCGCGGCTTCGCCCGCAGCCCCGTCATCCTGGAGACCTGCCCGTCCGGCGAGGACATCTTGTGCTCTTCGGCTCCTGCGGGGCCGGTCGGGGCCGTTCCCGGGGCGCGGCGGCCGGCACTTCGGTACCTCGGCGGAGCGCCCGTGGGCCGCAGGCCCGCTGGGGCGCTCCGCACAGCTCAGCGAAGTGCCGACCGCCGTGACCTGGTGACTGAGCACGGCCCCGAGCGGCCCCGCAGGGGCCGCCTTGAACAAGTAGAGAAAATCCTCACCGTGGCCCCGACAACCACGGGACACGGGCTGTCAGGTCACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACACGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7074010-7072015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================== ================== 7074009 30 96.7 31 .............................T CCTGGTTGGTTTCACGAGGAGGTAGGTCTCC 7073948 30 100.0 31 .............................. CGGTGAGGATGACGAAGGTCATGCCGATGGC 7073887 30 100.0 31 .............................. GGATGCCGAGTGCCCAGCAGGTCGTGCTGAC 7073826 30 93.3 37 ............................CG CCAAGGTCTCCTCGGCCGATCCGGTGCCCACCGGGGC 7073759 30 96.7 31 .............................T CGCACCACATCGTTTCACCTGCTGAGGAGTC 7073698 30 96.7 31 .............................G ACCGGCTGGCCTCCAACCTCAGCCACGTGTT 7073637 30 96.7 32 .............................T GGGACGGCGGCCAGGACTGGCCGTACTCGACC 7073575 30 96.7 31 .............................T TGCTGTATCCGTCGCCCTGGGTGTTGAGCCC 7073514 30 100.0 31 .............................. CGCGATCCGCTACCAGGTCAGCGACCCGGCC 7073453 30 93.3 31 ............................CA GGTCCATGACGACCTTGCGGCCAGGCGGCGG 7073392 30 93.3 32 ............................CT CCCCAAGGCCGGTGCCCAGCGGGAACGCCGTA 7073330 30 93.3 31 ..........A..................T ATCTGAAGCCCTTGCAGGAACTGCGCGCCGT 7073269 30 96.7 31 .............................G CCATCCTCAACCGCCGCACCTCCGCCCAGGC 7073208 30 96.7 31 .............................T GGAACCGGCCGGTGTCCATCTTGCGGTCGAT 7073147 30 100.0 31 .............................. GCCCGGCCAGGATCACGCAGCGGGAGCAGCC 7073086 30 100.0 31 .............................. CCCGGCAGCGTGCCCGGCACCCCGCCGCGCC 7073025 30 96.7 31 .............................G TGGCCGCGCCGTACCGGTGGGCGCAGTCGCG 7072964 30 96.7 31 .............................G TCGACGGCCAGCCGGTAGGTGTCGGCGTGCC 7072903 30 96.7 31 .............................G GCGCGTTGGACCTGCGGTCCCCCGAGGCCGT 7072842 30 96.7 31 .............................G AGTACATGCGGGCCTGGTCCAAGGCACTCCG 7072781 30 100.0 31 .............................. CGGACAGCTCGCGGGCCATGGAGTCCAGCCG 7072720 30 100.0 31 .............................. CGTCGCTGGGCCGCCACCCCGGTCCGTCCGG 7072659 30 96.7 31 .............................T GGACCGGAGGTGCGTGGCCAACCCGGTGCAG 7072598 30 96.7 31 .............................G CGAGTGCGTCGAGGCCTCCGTGCTGGACATC 7072537 30 100.0 31 .............................. CGGACGACCCGACGCCGGTCGGCATCCTGGA 7072476 30 96.7 31 .............................T ACACGATGTCGCCCTGGCCGTGCTCGCCAAA 7072415 30 96.7 31 .............................T GATCGGCGGCACCCGGTGGGAGGACATCGGC 7072354 30 96.7 32 .............................A CCTTCGGCCCCATCGCGCAGAGCCGGAGTGAC 7072292 29 90.0 31 ....A................-.......G TGAAGGGCCAGCTGGAGATCCTCGGGATCGT 7072232 29 90.0 31 ....A...-.T................... AGAAGCGCAGCCTGGTCCCAGTCCCCAACCG 7072172 30 66.7 98 ..T.AT.T..G.....C...AAC......A CCGCACTCATGCGCGCCGTGTGCGCGACGTTGTTCGCCTTGTCACATGGGGTGCTCCGGCTGTCGGCTGCCTCGCGTCCCAGCTGCCCAGCTCATCGA 7072044 30 76.7 0 ..G.....T...AT......CT..T..... | ========== ====== ====== ====== ============================== ================================================================================================== ================== 32 30 95.1 33 GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AACAACGGCGCCACCGCGATCTGACCGGCCAGATCATGGGGCAGCTGGACGACCGCGTCCCCGTTGGGGTAACCGGCCTGCCGCAACGCCTGGAACACCTGGTCGCTCTTGCGCTGGAACTCCTCGGTGATCTTGCCCAGATCGTGCAGCCCGGCCCACAACACGACCAACCGCTGCGCCTGCTCCTGCGAGACGCCCATGCCCTCGGCGATGACCTCTCGCTGTGCCGGGGAGAGCACTCGCTCCCACAACGCCCAAGCCGCCGCGGCGGCATCCGCGCTGTGCCAGAACACCGGGTACCGCTCCCGCAGACCGCGTTCCTTGGCCCAGAGCAGCATGTCCAGCCCCACCATCAACCCCACCTGACTCCTCCGGCAGTACCTGTGACGCAACTATCGGTACCCTCACCCCCTGACAACCACCACCACTGGGACAACCGACCGGTGACACCGCACCTTGAAAACTCACAACTCGCTCTGCAAAGCCGCAGGTCGCGAAGT # Right flank : TGCGGCGACCGGGGGTGTCCCTATTTCTTCTGTCAAGCTGCGACAGGGATCGCCGAAGCTTCAGTTTCGGGGCGTTGTGGCTGGTAGAAGGCCTTGTTGCGGAGCATAGCGAACAGGACGTCGCAGCGGCGGCGTGTCAGGCAGATGAGGGCGGCGTTGTGCTTCTTGCTCTCGGCTCTCTTCTTGTCGTAGTAGGTCCGGCTGACTGGGTCGCTCAAGGCGGCGAAGGCGGCCAGGAAGAAGGCCCGTTTGAGCTTGCGGTTGCCAGTGCGGGCGGGGTGCTCGCCGTGGATGCTGGAGCCGAGCGGTGGGTGACCGGGGCGATTCCGGTGTAGGCGGCCAGATGCGCCGAGCTGGCGAAGCCGGAGGCGTCGCCGATCTCCAGCAGGATGCGGGCGGCGGTCCTGACCCCGATGCCGGGCAGCGAGATCAGGACCCGGGCAAGAGGGTGCGCATTGAGGATCCTCTCGGCTTCGGTTGTGATCTGTTTGCGTTGCTGG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7078658-7076923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7078657 29 96.6 32 ................C............ GCCGCCTGACCACCATGGACGCCGAGTGGATC 7078596 29 96.6 32 ................C............ CTCACGCAGGCCGAGCAGATCAAGTACGCGGA 7078535 29 93.1 32 ................C...........T GCCCCAGGTGAGCATCCAGATCGCCGGTTTTG 7078474 29 93.1 32 ................C...........C GATGACCGTCCAGTGTGGACATCCGGATTCCC 7078413 29 96.6 31 ............................A CCATTCCGCGCGCGGGCAGCACCGCCGCCTA 7078353 29 100.0 32 ............................. ACGCCGACTGGACCATGCCGGTCATCGGGATG 7078292 29 100.0 32 ............................. ATGACCGCCGAGGTGTTCGGCGTCGGTGTCGT 7078231 29 100.0 32 ............................. CCCGCCATCGACGGCCTGGTGGACGCCGGGCT 7078170 29 100.0 31 ............................. GCGCCGACCACGGTGGTGGCGACGGCGGCGC 7078110 29 100.0 32 ............................. CTCGACCAGACCTACCCGGATCTCATGCAGTG 7078049 29 100.0 32 ............................. CGCACTGGCGCGCCAAGATCGCCCTCCACTAT 7077988 29 100.0 32 ............................. GGCTTCAGGCTGCCCCAGGTGCAGCACGGGGA 7077927 29 100.0 32 ............................. TTCTGCCACTCCGCCGCCGATGAGCCGACCCT 7077866 29 100.0 32 ............................. GTTCTTCACGATCTCCCCATGGGCGCGGGCGA 7077805 29 100.0 32 ............................. GCCCCACCCGTTCATCCGGATCGGCCCTGGCG 7077744 29 100.0 32 ............................. ACTTCGTCGGCCGCCCATCGCGCTCTACTGTC 7077683 29 100.0 33 ............................. CACGTCGATCACGTCGTCAGGGGTCATGCTGGT 7077621 29 100.0 32 ............................. TCCTTGGCCAGCCAGTGCGTGGGCGCGTCGGG 7077560 29 100.0 32 ............................. TGCGCGATCTCGCCGTCCAGGTCGTTGAGCAC 7077499 29 100.0 32 ............................. GGAGATTTCGCGGCCTACCTGGTGCGCTCCGG 7077438 29 96.6 32 ..........T.................. GCCTGCGTACTGGAACGGCGCGGGGCGGGCGT 7077377 28 96.6 32 .....-....................... GCCGAGGAGAACGGACTCCTCACGATCGGCCG 7077317 29 100.0 32 ............................. AAGGCTCGGCAGTACCGCCGAATCTGGGTTGA 7077256 29 100.0 32 ............................. CCGCACCGGTACGCGGTCGCGCTGGCGCTCGG 7077195 29 100.0 32 ............................. TACCTCACTGGCTGGCGCCCACAGGACTTCCC 7077134 29 100.0 32 ............................. GCCATCACCACCAGACCCAACCCTGTGCTGAC 7077073 29 89.7 32 ...........A.A..........C.... ACCGCGCTGGACCAGGTCCGCACCGAACTCGT 7077012 29 82.8 33 ...T.....G...A....A.....C.... GCCGCCCGCAGGGCGGGGCTGCCCGTAGTCCCC 7076950 28 75.9 0 ...-......GATA..G.......C.... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.2 32 GTCCGCCCCACGCCCGTGGGGATGTTCCG # Left flank : AGCATTTACTGCACGATGCCGTCTTGCTTATTGCCGGACACGTCACGCCCTCCGCATGTTCCACGCCCGGAAGGCCAGGCCGGTTCTCAAGGCCACGCAGACACGCGGGCGATCCCCATCGCCACCAGCCGCCCCCTGCGCAGCGCACAGGAGCAACCACACCTACCGCAGCCACTCCCAAAATGGTTGCGTCGACAACGACGCATTCAAGGCGTGTTTGATTCGGGTTTCAACAAATGCGCACAACTGAGATCCTCGGGCACGACAGACTGCCCCAGGGTCTGCTCACCGTGGAGCTTTCCGCAGATCAAGCCGCCGGGACCCTGCCCAGGCGTATTCAAGCTCTGTCGACCAGGTTCCTGGAGCCAGGGAGCACGTTCCGGTACCGTGCCGACCGCTCCCGGGACGCCGGCGCCATCGACGCCTCAACAGCCCTACGAGTAGCAGTTCTTGATCTTTGAAAACTGACGATACGCTCGCATAGCAGCAGGTCGCGAAGT # Right flank : AGGACAGTGAGGCGGCATGGCTAGTCAGTCGATCTTGGTGATCACCAAGCCAAGCTGATCATCCAGAGTAAACCTCCGCTTGCCGATAACCACCGCACCTACCGCGGTCCCCCGCAAAGGCAACGGGATGAGGACAAGGTCTCCAAGCCACGGCGTCTTCTCCCAACTCACTGGACGCCGCCCGTGGCCCTCGTCCTGGTGCTCGGTCAGCAACGACGCCCGGATCGGAATAGACCGAGCCATCACCATCCGCACCACCACCGCCGACGGCCGGGACGACGCCGAGGCCTCCTCACCCGGCAAGGCCACCCAGCGGTGCCGGTCCAGCCACCGCCGCCCCGACTCGTCCACGAAACAACACACCACCCGCTGACTATCCGCCCCCAACCGGGTCGTCAGCTCCACCTCCCAGTCCTCCAAAGGCCCGGCCTCGGCCACCGGTGGCCGGGACAGCTGCTCCAACCTCCGGATCGAGCCCGCCTCCGGGACCTTCACCCACC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCCCGTGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 7085466-7086473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 7085466 30 96.7 31 .............................G AGGGACAGGACGAGCCGGCGCACGGCACGCT 7085527 30 96.7 31 .............................G GAATGGACGAGCAGTCCGCGCAGGCCGTGCG 7085588 30 96.7 31 .............................T AATGGTCCCGACCGGCGAGCCGGTAGGAAAA 7085649 30 100.0 31 .............................. ATGCCCGCCCTGCACCGGCCCCGCTATCCGG 7085710 30 100.0 31 .............................. CGGAGGCCAGTTCGGCCGCCACGGCGGCGCG 7085771 30 96.7 31 .............................G CCTGGACGCCGACGACATCGCCGACCACCTC 7085832 30 100.0 31 .............................. CGCAGTCGGCGATGGAGACCGTCAACGACCT 7085893 30 100.0 31 .............................. CACCGGAGCGGCCGCTGCTGCCCTCGTACGC 7085954 30 100.0 31 .............................. CACGATCACAGGCGCCCCAGACGACGCGAAG 7086015 30 96.7 31 .............................T CCAGCGCGGTCGGCGAACGCTCGGTCCGGGA 7086076 30 96.7 31 .............................T CGCTGTCGATCACCTCGTCCAGGACGTCGTC 7086137 30 96.7 31 .............................A AGCTCACCGACTCCGGCAACCTGGTGCGTGA 7086198 30 96.7 31 .............................A CGTCATCGCGGCCTCGACCCGGGCGTGGTGC 7086259 30 100.0 32 .............................. GCATTACCGGTGTATTCACGGGTAAGCCCTAC 7086321 30 100.0 32 .............................. GCATTACCGGTGTATTCACGGGTAAGCCCTAC 7086383 30 96.7 31 .............................A CCTAGGTCGTCCACCCGGTCCACCTGGGTCC 7086444 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ================================ ================== 17 30 98.1 31 GTGCGCCCCACGCACGTGGGGATGGTCCGC # Left flank : GCATCGTCGCCGACATCCAGGCCCTGCTGGCCCCGGAGGAGGCGCAGGTGCCGGAGCAGGAGATGGCCGAGCTGGTGTCGCTGTGGGATCCGGAGCTGGGCGTGCTCCCGGCGGGCATTAACTACGCCGAGCAGACCAGCGGGTGAGGAAGGAGGAGAGCTGTGCCGTCGATGGTCGTGCTGGCCACCACCGCGGTCCCGGACCACGTGCACGGGGCGCTGAGCCGCTGGTTGCTGGAGGCCATGCCCGGGATGTTCGTCGGCAGCGTCTCGGCCAGGGTGCGGGATTTGTTGTGGGACAACGTTTCCGCTGTGGTGGGGGAGGGTGCGGCGGTTCTGGTGCATCCGGCCGACAACGAGCAGGGCTTCGCCCTCCGCACCGCCGGGGACCGGCGGCGGCAACCATACGAGCTGGACGGGCTCACGCTGATTCGTTGGCGAGCCCCTGTCCAGGAGGCTGAAGAAGTGCCGGTGCCGTGGTAAATGTGCAGGTCGCGAAGT # Right flank : GCGGGACACCTGGATAGCAGAGCTGAGGGATCCAGCGGGGTGTGCGGGAGTCTGGGGATCTCCTGTCCCTGCGTCGTGGTAGACGTCTACGGTGTTAGGACCACACGGACGTGGTGCTTGGTGATGACCAAGCCAGCGGGCTCGCTGTCCTCAGCAGTTCCAGCGGGGTAAGCGGCGATGACAGGTTGTGCGGAGCGGTCACGACCGAAGAGTCGGATCTGCTCGACCAGCCTCTCAGCGAGCTCAGCGGCGGCCGGGCCTCGGCCGACGGCGCCGAGTTCGTAACGGGATTCTCCGTCCGGGCAGGGCACGTCGGTGAGCCGCGGCTTGGCGAGGTAGGCCAGGGAGTCGCCCTCGACCATGGCCGGGACGCGGTAAGGGTTGGCGGGGCGCCAGGCGGTCATGGCCTCGGGCTCAACGGCGAGTCGGCAGGTGCCCGGCTCGGTGGCGGTCAGCCACAGCCAGATGTGGTCGAAGGGCTCGTTCGCGCCTACCGTCAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 7127466-7127067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 7127465 35 97.1 38 ................T.................. GACAGGACAACGGGCCTGGGCTGTACTCGCAGCTCGGT 7127392 35 97.1 36 ................T.................. GTGGACGGCCAGGTCTGCCGGACCAGGTCGGTCAGG 7127321 35 100.0 38 ................................... GAGCCGGGTGTGCCGCAGGCCGTCGACCCACTGGTCGC 7127248 35 100.0 40 ................................... ACCCCACACCCCCGATCCTGTCGTAGACGGCGACCGGCCC 7127173 35 94.3 37 ............................C....A. TCGGGGTGCCCCGCATCTTGTGCGCGGGCACTACCAT 7127101 35 85.7 0 .........G.A...T............C.....A | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 95.7 38 CTCTCGGCGACGCCTCGCGTCGCCCCTCGTTGCGG # Left flank : CTGCACGCCTGGCCGGTGCTGGCCGTCTCTCGGCGGCGCCTCGCGGCGCCCCTCGTTGCGGCCAGTCTGCGCCGATGAGCCACGGTGCCCGCAGCGCCAAGCACCGCTCCTCATTGCGGCGTGCGGCAGTCCCGGCCCGGCTCGACACCGCAGGTCGGGCCTCTAAGCGGCGCCAAGCGCCGCGCAGGTCGTCAAGGCAGGAAAAAGTGGTGTCGGTGCCGGTCGGTAGCCTCACGACGCTGATGACACACCCGAACTCGATCAACTCCACAGAGCAACAGCCGCGCACTTCAGGCTCTCTAGGCTCATCGGTGGGCCGAAGATCGAGGGACTGCGAGCGGGGAGGTGATGCCACCATCAGGCGGCAGCGCTCGCGCCCAGGTCAGAGCACTTCCAGGTCGCGATGATGTACTGCGTCAACATGGCAAGCTGACTCCGATCAGTCACCGCTCGCGATGATCTACACAACAGCAGGTCGCGGCTCATGTATAGAGTGAGCT # Right flank : CCTCCGTCAGGTCGTGGGCACTCATCGGTTCGAGCTGGCGCGGCCACGTCGATCGGGCATTTCAGCACTACGAGAGTGCCGACGGTGTCAGAATAGTCCGATCACAGATCGGTGTAGGTGTACAGGCATGTACCTGCGGTGGGGGCCGCGGGATGAGGGGGGACTTGATGTCGACGATGACCTTGACGACGATCCATGACCGGGTTCTGCCAGTTGAGAACCTTCTGGAGGCCGCGCGCGAGGTAGAGCGTGAGCTCGACCGCGCGGTGCGGTCGCGGGGGATGGGCCTGGGGGAGTTCAGGGCGTTGCTGGCTTTGGCGGTGCACCGGCAGCCGATGACGATGACGTCGGTGGCCGAGGCGGCGAGGACCTCGCGGCCTCAGTTGAGCCGCACCATGGAGCGGCTGTGCGAACGGGGTTGGGCACACCGCACGCCCGAGGAGGGGCGAGGGGACAAGCGGCAGATCTGGGCGCTGCTCACCGAACGTGGTCTCGATGCG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCGGCGACGCCTCGCGTCGCCCCTCGTTGCGG # Alternate repeat : CTCTCGGCGACGCCTCTCGTCGCCCCTCGTTGCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-14.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 8 7128376-7127904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7128375 36 100.0 35 .................................... AGCCAGACCATGCCCTCGCCGAGGTTGCGGTTGAC 7128304 36 100.0 36 .................................... AGGTCTTCGGACGCCTTGCCGGTGAACGCGCTGATC 7128232 36 97.2 38 .....A.............................. TACCCGCCCGGGGCGTACAGCCTGCCCAAACTCGGCGC 7128158 36 100.0 37 .................................... GATTCGCCGATCGGCTATTCCGAGGCCGACGTCGGCC 7128085 36 97.2 36 ................................C... TACGAGACGTTGATGTGTCCGAAGTTGATCACGCTG 7128013 36 94.4 38 ................................C..C GGGCTGCGGGTCCTGCACGCCTGGCCGGTGCTGGCCGT 7127939 36 88.9 0 .........G.........G............C..C | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 96.8 37 CTCTCGGCGACGCCTCGCGTCGCCCCTCGTTGTGGG # Left flank : CTACCGGCTGCAGCGTGGCCGTGACCGTGATCGCCGCATCCGGCCCGGCCAGTGATACCGCCTGCTCCAGCCGTTCGTACAAGCCCATCTCCGCCACGTCCTCCTTGTACCGCCGCACCGCACTGTCACGGTGCGTACCTAGGTGAACACAGAAAATCACATGCCACCGACAGAACCCGTTCCTGCAGGTCACCATGGCAGGGAGAGCGGTGTCGGTGCCGGTCGGTAGCCTCACGACGCTGATGACACACCCGAACTCGATCAACTCCACAGAGCAACAGCCGCGCACTTCAGGCTCTCTAGGCTCATCGGTGGGCCGAAGATCGAGGGACTGCGAGCGGGGAGGTGATGCCACCATCAGGCGGCAGCGCTCGCGCCCAGGTCAGAGCACTTCCAGGTCGCGATGATGTACTGCGTCAACATGGCAAGCTGACTCCGATCAGTCACCGCTCGCGATGATCTACACAACAGCAGGTCGCGGCTCATGTATAGAGTGAGCT # Right flank : CAGTCTGCGCCGATGAGCCACGGTGCCCGCAGCGCCAAGCACCGCTCCTCATTGCGGCGTGCGGCAGTCCCGGCCCGGCTCGACACCGCAGGTCGGGCCTCTAAGCGGCGCCAAGCGCCGCGCAGGTCGTCAAGGCAGGAAAAAGTGGTGTCGGTGCCGGTCGGTAGCCTCACGACGCTGATGACACACCCGAACTCGATCAACTCCACAGAGCAACAGCCGCGCACTTCAGGCTCTCTAGGCTCATCGGTGGGCCGAAGATCGAGGGACTGCGAGCGGGGAGGTGATGCCACCATCAGGCGGCAGCGCTCGCGCCCAGGTCAGAGCACTTCCAGGTCGCGATGATGTACTGCGTCAACATGGCAAGCTGACTCCGATCAGTCACCGCTCGCGATGATCTACACAACAGCAGGTCGCGGCTCATGTATAGAGTGAGCTCTCTCGGCGACGCCTCTCGTCGCCCCTCGTTGCGGGACAGGACAACGGGCCTGGGCTGTACT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCGGCGACGCCTCGCGTCGCCCCTCGTTGTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-14.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 9 9380982-9379674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 9380981 30 96.7 30 .............................G ACCCTGCAGCAGGTGACGACGCTCCGGCGC 9380921 30 93.3 31 .......................A.....G TGGCGATGCAGTACCCGCCGGGCTCAGCCAC G [9380920] 9380859 29 93.3 31 .....................-.......G CGCCGGTGAAGTCGAAGTGCACGCGGCCGGG 9380799 30 96.7 31 .............................G TTGGCCTGCTGTCGTGGATCGTGGGTGTCAC 9380738 30 96.7 31 .............................T TTCAGGCAGGCGGGCCAGCTGGGCATGCGTA 9380677 30 100.0 30 .............................. TCCGGTAGATGCGAGCTTCATCGCGTCCTT 9380617 30 96.7 29 .............................T GCTCCGGCCAGGACTGGCCGTACTCGACC 9380558 30 96.7 31 .............................T TGCTGTATCCGTCGCCCTGGGTGTTGAGCCC 9380497 30 100.0 31 .............................. CGCGATCCGCTACCAGGTCAGCGACCCGGCC 9380436 30 93.3 31 ............................CA GGTCCATGACGACCTTGCGGCCAGGCGGCGG 9380375 30 93.3 32 ............................CT CCCCAAGGCCGGTGCCCAGCGGGAACGCCGTA 9380313 30 93.3 29 ..........A..................T ATCTGAAGCCCTTGCAGGAACTGCGCGCC 9380254 30 96.7 31 .............................G CCATCCTCAACCGCCGCACCTCCGCCCAGGC TG [9380251] 9380191 30 96.7 31 .............................T GGAACCGGCCGGTGTCCATCTTGCGGTCGAT 9380130 30 100.0 32 .............................. GCCCGGCCAGGATCACGCAGGTGGTCCTTGAC 9380068 28 93.3 31 ....................--........ GGCTGAGGCGCTGGACACGGTGCTTGACCGG 9380009 30 96.7 31 .............................T CTGCTGCTGACCCACGGACCAGTGCCTCGAT G [9379987] 9379947 30 96.7 31 .............................A TGTGTTCGGAACGAACTGATGATGATTCGGA 9379886 30 100.0 31 .............................. TCGCCGAGTGAGACCGCCGGGTTGAGCCCCT 9379825 30 100.0 31 .............................. TGCGCCAACAGGTTCATGCCGCTGTTATTCC 9379764 30 96.7 31 .............................G CCAAGAACAGCTAGCCGTTCTTCGGTCGGAG 9379703 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 22 30 96.7 31 GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AACAACGGCGCCACCGCGATCTGACCGGCCAAATCATGGGGCAGCTGGACGACCGCGTCCCCGCTGGGGTAACCAGCCTGCCGCAACGCCTGGACCGCCTGGTCGCTCTTGCACTGGAACTCCTCGGTGATCTTGCCCAGATCGTGCAGCCCCGCCCACAACGCGACCAACCGCTGCGCCTGCGCCTGCGAGACGCCCATGCCCTCGGCGATGACCTCCCGCTGCGCCGGGGACAACACCCGCTCCCACAACGCCCAGGCCGCCGCGGCGGCATCCGCGCTGTGCCAGAACACCGAGTACCGCTCCCGCAGACCACGTTCCTTAGCCCACAGCAGCATGTCCAGCCCCACCATCAACCCCACCTGACTCCTCCGGCAGTACCTGCGACGCAACTATCGATACCCTCACTCCCTGACAACCTCCACCGCTGGGACAACCGACCGGTGACACCGCACCTTGAAAACTCACTACTTGCTCTGTAAAGCCGCAGGTCGCGAAGT # Right flank : GGGACCTGGCGGCCGAACTCGCTGAAGCTCCATTTTCGGGGCGTTGTGGCTGGTAGAGGACCTTGTTGCGGAGCATGGCGAACAGGACGTCGCAGCGGCGGCGTGCCAGGCAGATGAGGGCGGCGTTGTGCTTCTTGCTCTCGGCTCTCTTCTTGTCGTAGTAGGTCCGGCTGACTGGGTCGCTCAAGGCGGCGAAGGCGGCCAGGAAGAAGGCCCGTTTGAGCTTGCGGTTGCCAGTGCGGGCGGGGTGCTCGCCGCGGATGCTGGAGCCGGAGCGGTGGGTGACCGGGGCGATTCCGGCGTAGGCGGCCAGATGCGCCGAGCTGGCGAAGCCGGAGGCGTCGCCGATCTCCAGCAGGATGCGGGCGGCGGTCCTGACCCCGATGCCGGGCAGCGAGGTCAGGGCCCGGGCAAGAGGGTGCGCATCGAGGATCCTTGAGCTTCCCCCGGTAGCCTGAGGTGGTTGTTACCTGGATCGGGTTGGTGATGCCGGGATGGTA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 9385751-9383957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIOO010000001.1 Crossiella equi strain DSM 44580 Ga0451160_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 9385750 29 100.0 32 ............................. GCGATCGCCCACGGCGAGCGACCGGTCCCAGT 9385689 28 96.6 31 ....................-........ TCCGAGGCGTGCGCACCCCGGCGGTCGCGCC C [9385681] 9385629 29 100.0 31 ............................. CTGGACCGGAACTCGCGGCCGGAATGGCCAC C [9385607] 9385568 29 100.0 32 ............................. AACATCCCCGTCATGGCTGAGCTGCACGGCGA 9385507 29 100.0 33 ............................. ACCAATCAACCCGGCATTCCTGGACATTCCCGA T [9385484] 9385444 28 96.6 33 ....................-........ TCCACGTTCGTGACCGACCCCGCCCCTGATGTA 9385383 29 100.0 32 ............................. TCCACGTTCGTGACCGACCCGCCCCTGATGTA 9385322 28 96.6 31 ....................-........ ATCCCGCTGCGGTGGTGGTGCGGCTGTCGCT C [9385314] 9385262 29 100.0 87 ............................. TCGCTGGGGGGACTGTCCCGAGGGTGGCCGAAGTCCGCCCACGGGGGATGTTCCGCTCGACCAGACCTACCCGGATCTCATGCAGTG 9385146 29 100.0 32 ............................. CGCACTGGCGCGCCAAGATCGCCCTCCACTAT 9385085 29 100.0 32 ............................. GGCTTCAGGCTGCCCCAGGTGCAGCACGGGGA 9385024 29 100.0 32 ............................. TTCTGCCACTCCGCCGCCGATGAGCCGACCCT 9384963 29 100.0 32 ............................. GTTCTTCACGATCTCCCCATGGGCGCGGGCGA 9384902 29 100.0 32 ............................. GCCCCACCCGTTCATCCGGATCGGCCCTGGCG 9384841 29 100.0 32 ............................. ACTTCGTCGGCCGCCCATCGCGCTCTACTGTC 9384780 29 100.0 33 ............................. CACGTCGATCACGTCGTCAGGGGTCATGCTGGT 9384718 29 100.0 32 ............................. GAGAGCGCGAACGCGCCGACCGCGGCACCGAG 9384657 29 100.0 32 ............................. CCGGGTCCGGTCCTGCCGAGGTGCTCTCCCGC 9384596 28 96.6 32 .....-....................... GCGCCTCGGCCTCGTACGCCAGGGCCACCTGG 9384536 29 100.0 32 ............................. GCGCCATCGTGTCGCGTCCGCCCCTGGCCGCC 9384475 29 96.6 32 .........G................... GGCTTCGTGCTCGGCCAGGAGTCCATGCCGGT 9384414 29 100.0 32 ............................. CCGCGGCCCGCGCTCCTCGCCGCGCTCGCCAC 9384353 29 100.0 33 ............................. GAAATCAGGGTGTCCACACTGGGACGATCATCG 9384291 29 96.6 33 ....................A........ TGGATGGCCGCACTGGGCGTACGTCCTGGAGGC 9384229 29 100.0 32 ............................. GCCACCACCGAAGAGCGTCACACCCTGCATGA 9384168 29 100.0 32 ............................. GTGCTGAGGTCGGCTCGATCAGGCTGGGGAGG 9384107 29 96.6 32 ...........A................. GCCATCACCACCAGACCCAACCCTGTGCTGAC 9384046 29 89.7 32 ...........A.A..........C.... GCCGCGCTGGACCAGGTCCGCACCGAACTCGT 9383985 29 82.8 0 ...T.....G...A....A.....C.... | ========== ====== ====== ====== ============================= ======================================================================================= ================== 29 29 98.2 34 GTCCGCCCCACGCCCGTGGGGATGTTCCG # Left flank : CATTTACTGCACGATGCCGTCTTGCTTATTGCCAGACACGTCACACCCTCCGCATGTTCCACGCCTGGAAGGCCAGGCCGGTTCTCAAGGCCACACAGACACGCGGGCGATCCCCATCCGCCACCAACCGCCCCCTGCACAGCGCACAGGAGCAACCACACCTACCGCAGCCACCCCCAAAATGGTTGCGTCGACAACGACGCATTCAAGGCGCGCTTGATTCGGGTTTCAACAAATGCGCACAACTGAGATCCTCGGGCACGACAGACTGCCCCCAGGATCTGCTCACCGTGGAGCTTTCCGCAGATCAAGCCGCCGGGACCCTGCCCAGGCGTATTCAAGCTCTGTCGACCAGGTTCCTGGAGCCAGGGAGCACGTTCCGGTAGCGTGCCGACCGCTCCCGGGACGTCGGCGCCATCGACGCCTCAACAGCCCTACGAGTAGCAGTTCTTGATCTTTGAAAACTGACGATACGCTCGCATAGCAGCAGGTCGCGAAGT # Right flank : GCCGCCCGCAGGGCGGGGCTGCCCGTAGTCCCCGTCGCCCCAGATACGGGGGGGGATGCTCCGAGGACAGTGAGGCGGCATGGCTAGTCAGTCGATCTTGGTAATCACCAAGCCAAGCTGATCATCCAGAGTAAACGTCCGCCTGCCGATAACCACCGCCCCTGCCGCAGTCCCCCGCAAAGGCAACGGGATGAGGACAAGGTCTCCAAGCCACGGCGTCTTCTCCCAACTCACTGGACGCCGCCCGTGGCCCTCGTCCTGGTGCTCGGTCAGCAACGACGCCCGGACCGGAATAGACCGAGCCATCACCATCCGCACCACCACCGCCGACGGCCGGGACGACGCCGAGGCCTCCTCACCCGGCAAGGCCACCCAGCGGTGCCGGTCCAGCCACCGCCGCCCCGACTCGTCCACGAAACAACACACCACCCGCTGGGTATCCGCCCCCAACCGGGTCGTCAGCTCCACCTCCCAGTCCTCCAACGGCCCGGCCTCGGCCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCCCGTGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //