Array 1 505191-506195 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUJ02000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0209 NODE_2_length_733145_cov_35.286547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 505191 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 505252 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 505313 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 505374 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 505435 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 505496 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 505557 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 505618 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 505679 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 505740 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 505801 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 505862 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 505923 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 505984 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 506045 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 506107 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 506168 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 522464-524506 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUJ02000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0209 NODE_2_length_733145_cov_35.286547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 522464 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 522525 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 522586 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 522647 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 522708 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 522769 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 522830 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 522891 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 522952 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 523013 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 523074 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 523135 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 523196 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 523257 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 523318 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 523379 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 523440 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 523501 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 523562 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 523623 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 523684 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 523745 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 523806 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 523867 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 523928 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 523989 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 524050 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 524111 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 524172 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 524233 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 524294 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 524355 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 524416 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 524477 29 96.6 0 A............................ | A [524503] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //