Array 1 560145-554920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009750.1 Xanthomonas translucens pv. undulosa strain ICMP11055 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 560144 31 100.0 33 ............................... TTCCGCTTGGTGCCGAGCGTGCCGCGGGAGGGC 560080 31 100.0 35 ............................... CTCGTTAGCTCAGTCATTGCCGCCGATTCCAGCAC 560014 31 100.0 34 ............................... TCGGCCAACGCGCGGTAGGCCGTGCCTGGCATGT 559949 31 100.0 34 ............................... CTGAGAGCATTGAGGAATAGACACACTACGGGGC 559884 31 100.0 34 ............................... TCGAGATTGTGGCCGCAATATTTGGAGCGTACGA 559819 31 100.0 36 ............................... TGGGCTAGCTAACGGCATACCGCTGTCCGTATCCCG 559752 31 100.0 34 ............................... ATTGCAGAGCCTCCCGGCAGTCAGACACTAGCTT 559687 31 100.0 36 ............................... TTGGATACGGCCCACACCAATGCCCCAAGATAGGTG 559620 31 100.0 38 ............................... ATCATCACGGGCGGCAAGGACAACGATGCATCTCTGGC 559551 31 100.0 34 ............................... ACGTACCGCTTCCCGGGCTACACACAGCCGGATA 559486 31 100.0 36 ............................... CCTGTTAGCTACTACGGAGGTGCTATGTCCCGACTC 559419 31 100.0 34 ............................... CTGACCGACGCACAGCTGGCGGTGATCCAGAATC 559354 31 100.0 35 ............................... CCGTTTGGCTTTACCCCGCCGTCGGACTCTTCCGG 559288 31 100.0 35 ............................... ATCACGATGGATGACATTGTGACTGACTGGAATAG 559222 31 100.0 34 ............................... ACTGCAGCAGGAAAAAGTGCTGCTCGAGGTGGTG 559157 31 100.0 34 ............................... CAGCTGTCAAGGATTCCTTGACTATTGATGGCGG 559092 31 100.0 34 ............................... TTGGGATTTTGCACACTGCCGTTGAAGCGCTCGC 559027 31 100.0 35 ............................... TGCGACTTCCGCGACCGCAAATACGCACTGACCTC 558961 31 100.0 35 ............................... TACAATTGGGGATTTAACCCCGATACGATCCAGTC 558895 31 100.0 33 ............................... ATCTACTAGTTTTGCGGATACGCTTCGTCTGGT 558831 31 100.0 35 ............................... TCCCCGCTCCCGGAAGGCTATACCCTGCCCTACGG 558765 31 100.0 35 ............................... TCCGGGTAATCCTTGAAGTCTATGCAGCGAGCAAG 558699 31 100.0 35 ............................... CGGCAGAAAGCATGAACTGTGAAAATGGCCCATCG 558633 31 100.0 37 ............................... GTCAAGAACATGGTCACCATCCTGGGCGAGAAGCGTC 558565 31 100.0 35 ............................... CGGCCGAGCTACCGGAAACAGGCTATCGGTTCCAC 558499 31 100.0 36 ............................... ATCATTGCTGTCTACGGTGGCGTACTCAACACGTTC 558432 31 100.0 35 ............................... ACACAGGTTCGACGGGCCTTTGGGCGGCGCCGACC 558366 31 100.0 35 ............................... CAAGAGGAGCAGGAGCGCAAGGCCAAGAAGGGTCC 558300 31 100.0 34 ............................... CTTTGCCTGGCTCTGGTCGATGCCCTTCTCGGCC 558235 31 100.0 35 ............................... TCGGATACCCTGAGCACACGCTCGGGTGAGATGGT 558169 31 100.0 33 ............................... TCGGGCGTGGTCCGCAATCAGGTAACCGTCCTG 558105 31 100.0 34 ............................... ATCTAAACAAAGAGGAATTCCGATGACGGACAGA 558040 31 100.0 34 ............................... GAGGTAACCGGCCCGTACGATAAGGCGCGGATTT 557975 31 100.0 34 ............................... CTCATTAGCTCTGTCATTGCCACCGATTCCAACA 557910 31 100.0 34 ............................... CGCCGCAACAAGGCGCCCCCCTGCTTCTCTGTAC 557845 31 100.0 35 ............................... AATTAGACTTTCGAAATCCGCGATCTGCGAATCCA 557779 31 100.0 35 ............................... GCGAAACATTGCGCTGGTGTTAGCACGCTTGCCGG 557713 31 100.0 34 ............................... CTCCAAGCGCTGGCGAGGCGTGCCGACATCCATA 557648 31 100.0 34 ............................... CCTACCACGCTGCCCAACGACAGCGCAGAGCGCA 557583 31 100.0 35 ............................... TGGTCCTTCATCCCGTCGATGACCTGGCCCAGGTT 557517 31 100.0 33 ............................... TGCCGCGAGCGAGCCGATCGACGCCCTTATAGC 557453 31 100.0 35 ............................... TGCCCGAAGGTGACGCGCGAATCGTATGCGCCGAT 557387 31 100.0 36 ............................... ACCGCAGCGCCGGCATTGGTGACCGGTGATGCGGCC 557320 31 100.0 36 ............................... GCGTAGTGGTCTCCGCCCGCAGGCGAAGGTCGCCGG 557253 31 100.0 35 ............................... CAGCGCGTCCCTGCCCAGCGCTGAGGACTTTACGG 557187 31 100.0 34 ............................... AGGGGTGCGAAGCTCCTGCACCTTGATCGGGGTG 557122 31 100.0 35 ............................... AGGTTAAAGCCAACCAGCACGCTAGTGCCCTCCAG 557056 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 556991 31 100.0 34 ............................... ATAAATATGTTGGGAGTGTCTCTTGACGCGGTTG 556926 31 100.0 34 ............................... AAGGAAGATGGGCAGATTCCGTTGGTCCTGGCAG 556861 31 100.0 35 ............................... GCCAATGGCCTGCAGGTCGCCACCCGCATGTTTGG 556795 31 100.0 35 ............................... ACCAAGGTGGAAACTGTTGATATGGACGCCTTCGT 556729 31 100.0 37 ............................... TTGTCCTTAAGCAGCAGGTGCGCACGGCAGTAATCAC 556661 31 100.0 35 ............................... CGTGAAAAAGCTCTACATTGCGCACGGTGACAATA 556595 31 100.0 34 ............................... ACTAAGACGGTGAGCGTGATGGACCTGCGCACCA 556530 31 100.0 36 ............................... GACTTAGCGAACTTCATGGCCTGGGTAGCCTTCGTC 556463 31 100.0 35 ............................... TCGGTGTTCAACGGCCGTCGCAACCTCGCTGAGGA 556397 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 556331 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 556265 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 556199 31 100.0 33 ............................... TTCATGGGTTTCCCTCTGTGGGTTTCGTGGGCG 556135 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 556070 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 556006 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 555940 31 100.0 35 ............................... TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 555874 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 555809 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 555743 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 555677 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 555611 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 555546 31 100.0 35 ............................... CTGCTTGCTGAGCAGCTGCTCCCGGCCACGGTACC 555480 31 100.0 35 ............................... ATTGCTTTACGCTATCGGCGCGCACAGCACGCGAG 555414 31 100.0 36 ............................... TTGAGTTTCAGCTCTGCATCGACGGCCCGGATGCGG 555347 31 96.8 36 ....................C.......... CGCACGTTCGACGGCCCCAGGTGGAGGAACGCCCCG 555280 31 100.0 34 ............................... CAGTTCTCGTGCCCGGCACCGCCAGGCTTCTTGC 555215 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 555150 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 555085 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 555018 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 554954 31 93.5 0 ...............C.........C..... | G,G,G,T [554924,554944,554946,554950] ========== ====== ====== ====== =============================== ====================================== ================== 80 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCAGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTCCGCTTCTATCAACTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //