Array 1 3477-5061 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFO01000150.1 Pseudomonas aeruginosa strain Pae_CF67.06r CF67.06r_contig_150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3477 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 3537 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 3597 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 3657 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 3717 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 3777 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 3837 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 3897 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 3957 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 4017 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 4077 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 4138 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 4198 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 4258 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 4318 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 4378 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 4438 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 4498 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 4558 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 4614 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 4674 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 4734 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 4794 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 4854 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 4914 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 4974 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 5034 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15293-13944 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFO01000150.1 Pseudomonas aeruginosa strain Pae_CF67.06r CF67.06r_contig_150, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15292 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 15232 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 15172 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 15112 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 15052 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 14992 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 14932 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 14872 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 14812 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 14752 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 14692 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 14632 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 14572 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 14512 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 14452 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 14392 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 14332 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 14272 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 14212 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 14152 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 14092 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 14032 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 13971 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFO01000169.1 Pseudomonas aeruginosa strain Pae_CF67.06r CF67.06r_contig_169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 61 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 121 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 181 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 242 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 302 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 362 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 422 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 482 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 542 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 602 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //