Array 1 26529-27595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000025.1 Nostoc linckia z7 scaffold25.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 26529 36 100.0 37 .................................... GGCAATATCTTGCAACTGTTCTGGAGAAAAACTTTTC 26602 36 100.0 36 .................................... TAACGCATGGATCTTCCATTACCATTACAACTTCTT 26674 36 100.0 36 .................................... AATCTTTTGTCTCTCGATGGAGGGTGCTTGCAGATT 26746 36 100.0 40 .................................... TTGACACTAGAAGTTCCTCCTGCGCCGCCTTGACCATTAC 26822 36 100.0 37 .................................... GCTATAAAAACAGCATCGGAAGCGGGTATTCCAACTA 26895 36 100.0 34 .................................... TTTACAACAGAAAAAACACGGATTCTATGTAGAA 26965 36 100.0 38 .................................... AAGATTCTTTTTGCACGTTGTAAATGGCAGCAGGGATT 27039 36 100.0 39 .................................... TATTTGCAATACCCAGTCTTTTTTTGTTTTTGGCAAAAG 27114 36 100.0 41 .................................... TAAAGTTGATGGTTTTTGTCGTCCAGTGCTGTGACCTTCTC 27191 36 100.0 38 .................................... ACTTGTCCTTCCAACTTTGTGGAAAGACTTCTCGACTC 27265 36 100.0 37 .................................... CACCAAGCCAGTCAATCCTCAAAGTTCTTGAGGTTGC 27338 36 100.0 40 .................................... TCTTCCAACATGTTGTCGCCAATAATGGAAAAGCCGTTTT 27414 36 94.4 39 ..........C..C...................... CAAATCTCATTAGCCCAGTTCCCATTTTCGGAACGGGGT 27489 36 97.2 35 ..........C......................... AATTTCTTTGATTTTTGCTTTGAACTTCAAGTTTG 27560 35 88.9 0 ..........C..............C...-...T.. | T [27593] ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.7 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGCTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTCTTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCGTGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACACCAGTCGCCAAATCGCTACAATCCTATATTTTTCGTTGAGTGGTGTCGATTCCTTACTGGATAATGATTTGAGGTATGTGTGTTGTTCAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CCAAAAATATCCAATCTTGTGGGGTGGGCGTCTCGCCCGCCCAGTCCATAGGGCGGACAAGATGTCCACCCCACAAGAAAAAATCCCCGACTTTTTAGAAAAGCCGGGAATTTTATTTTTCTCAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATTACTTCGTCAGCATTACCAGTTGGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATCAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATTGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 31084-29682 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000029.1 Nostoc linckia z7 scaffold29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 31083 37 100.0 36 ..................................... ATCGAAGTTGCTCAAGCTTACGTTTCTCAGACTGGT 31010 37 100.0 36 ..................................... GTTACCTCAAGAAGTTGTAGTACAAGCAATTAAGTT 30937 37 100.0 36 ..................................... TGAGTTCATAACTCTATCAAAAGACCAAATAAAACT 30864 37 100.0 34 ..................................... GTGATTCGTGAGATTCAAATTCTGCTAAATGGTG 30793 37 100.0 34 ..................................... TCTTCATCTATCTCGCATGGGTCTACAGCTAAGA 30722 37 100.0 35 ..................................... ATAGGAAAAGGTGAAAACCCAGCAACCGACAAGGA 30650 37 100.0 34 ..................................... TTAGATATTGACTATTACACTCAGAGTAGTTTAA 30579 37 100.0 38 ..................................... ACTGGTGTAGCAACTTTAGGAAGTGCCGCAGTGACCGG 30504 37 100.0 36 ..................................... CAAGAGAAAAGTATCGTGACGCCACTAGATTAACAA 30431 37 100.0 35 ..................................... GAAAACTTTGCAGAAGATGAACAGCTAGACTTTGC 30359 37 100.0 32 ..................................... GAATTCTAGGCATATTCCCAATCATCGCCAAT 30290 37 100.0 34 ..................................... AGAATCCATGCGATTGCTCGCGTCTTTCCCTTTG 30219 37 100.0 31 ..................................... TGGATGGTATGGAGTGCTACCAACTGTTAGA 30151 37 100.0 39 ..................................... TTCGAGAGTACGCAAGACACCTTACAGAAACTTGTTGTA 30075 37 100.0 35 ..................................... CAACTCAAATTAATCGGTGGTAAAGGATCTTCTGA 30003 37 100.0 35 ..................................... CCCAGTCAATAAAAATTCCAGATACAGGGTAGTCG 29931 37 100.0 33 ..................................... TATGAGGAGAATAGCGTTGAATATTTACAACAG 29861 37 100.0 34 ..................................... ATCATTTAGGCGTGATAACCCCATAAATGCCTGC 29790 37 97.3 35 ...........C......................... CTGATTTACTGCGAGTTAAGGCAACATAAAGCAGA 29718 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.9 35 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGTAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAAGTAGGCCGATGTAAATAATTATTGTTGGGATAAGGCAGTTCTTGCTGGGAGCAGGGAGCAGGGAGCAGGGGGAGAAAGAGTTTGAGCCTTATTTACTTTTCTTTGCATAGTTTGGTTTTATTTCACCGACTTACTTAGTCAAAAGTGAAAAGACCAGCAAACGCCACAAAATTTTTATCCAAATGCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACAAACCTTTCAGGCAAAAGTAAATCAAAATCACCCGCGCATCATGCCCAGACAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTAGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTCTAAGGCTTTGGCG # Right flank : TTAAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAATTATTTAAATAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGAATGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGCAGTTTTGCTGTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 4354-3938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000193.1 Nostoc linckia z7 scaffold312.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 4353 36 100.0 42 .................................... TTGTTCCATCTGAATGCTGATAGAACCTATATCTTGTAAGTT 4275 36 100.0 40 .................................... ATATTTGAAGGTAGAGATTTTGTTGGAAGTAAACATTTAC 4199 36 100.0 38 .................................... TTTTTAGTCGTTTCAGTTGTTAGTCGCTCTTGCTTCTT 4125 36 100.0 34 .................................... TTAGAAGCCGTTGAACGATACAAGGTAGATATAG 4055 36 100.0 46 .................................... AGGACTCATCTTGTCTAAAAAGCCAGTTCCATTTTTTACAACTACA 3973 36 94.4 0 .......G......A..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.1 40 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TAGTTATGAGCAGTTTCAACTGGGATTGTTTATGATGAGTCAGCATATTATTGGTGTAGCTACAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGTAATATAAAGTTAATTTTTCAATATTACATGGGGAAAAATCGAACCGCAAAGTACGCAAAGAGATAAGAGTTGAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTGGCAAGTATAGTTTTGTAATGGGGATTTTAACGCCACAACAAAATTTGCTGGTTATAAAACTGGGGGACTTAAACCCCCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTTAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGAGTTTTTCGCCTCTGCTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAATTAATAGGG # Right flank : CAGCAATCTTTGTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACCAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACATAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTGACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAACAAGCGGGAGAATTATATGGACTCGGTAAACCAGAGGCGAGGTAATTTGTCAAGAGATTTTCTATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGTGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAATCAAAGGCGTAGCCAGCGGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 83391-83863 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000003.1 Nostoc linckia z7 scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 83391 37 100.0 34 ..................................... TACTTGTTTGCCAAATGCTTGAATGCTCCCGAAG 83462 37 100.0 36 ..................................... CTGGCTGTAACTTAGCTTCAAAACTTTCAGCTTCAA 83535 37 100.0 34 ..................................... ACTTTATATAAACCTGAGTTTAAGTTTACCAAAA 83606 37 100.0 33 ..................................... GGGATAAAGCAGACCCTTACAAGCTAGAACCCG 83676 37 100.0 35 ..................................... TACTATATCTGGCAATCCACAGACGGGAAGCATTA 83748 37 100.0 42 ..................................... TGCTTGGACTGAGATTTCAAATCCTGAATGCGCCAATTCTGC 83827 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACCAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATCTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTGAACAAGTTAATTAAACCTGAAACCGATAGTATACTTTTTTACTTTTTGTGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGCAAGCAACCTTCAAATTCCTCTGCTGCAAGAGTTTTGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTATACAGACTAGGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : CACAGATGAAACCTAATGTGCAGAGATAGTTAATACATCGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAGAATTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGATTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 3917-5546 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000221.1 Nostoc linckia z7 scaffold461.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3917 36 100.0 37 .................................... TTTACCACTACCTCAGCAAGTGGTTTTTCGTCGTCTG 3990 36 100.0 37 .................................... AAGAATCACAAAAAGAATGAAACAGACGACAGCGGTT 4063 36 100.0 38 .................................... ACCATCCGTGATACCTCCTCCAATAATTTCATTAGTGC 4137 36 100.0 36 .................................... GCATATACTTCTGAAGTGTTGGTTTGTGGGAAAGAT 4209 36 100.0 32 .................................... TCGTATTGCGCTTGATTGGCAGCTTGAACAAG 4277 36 100.0 35 .................................... TTTACCGTGGCGTATGGGCTTTTCGCTTTAACTTC 4348 36 100.0 37 .................................... TTTGTATCAGGTGAACTCATGCTTCCGCTTTTATCGA 4421 36 100.0 35 .................................... CTGTCCGTAAACCTCAACTGGCACATATTCGACAT 4492 36 97.2 38 ..........................G......... GTTTGTAAATTACCCTTAGCACTATTTTGTTCCCATCC 4566 36 97.2 36 ..........................G......... TTTTTACGGAACTATCTTGTAGTAGAATTGCGTATT 4638 36 97.2 36 ..........................G......... CTTGCGGGGATGGGGCCGTACCAGTCACGCCGAGCG 4710 36 97.2 35 ..........................G......... TTTTCTTGTAAGATTGATTTCCTAAATTCCCAGTA 4781 36 97.2 35 ..........................G......... TTCAGAATGCCATCGCTGGCTTTTGTTTCAATTTC 4852 36 97.2 39 ..........................G......... TTTCCTGTTGCGCGATGATTGCAAAAATGTCGCGGTACA 4927 36 91.7 36 ..........C....G..........G......... TTCTTAGCTGCGCCGGCAAAAGTGTCGTCGTCTTGC 4999 36 91.7 36 ..........C....G..........G......... CATTGAGCTACGAGCTTCATCCTGTATACGCAGCTG 5071 36 94.4 34 ...............G..........G......... AAAGGGGTCATCGGCGACGACGACCACATCCTTG 5141 36 91.7 39 ..........C....A..........G......... GCCTAACACACCATAGACAAACAGCTGTTGTTCGGCCGA 5216 36 100.0 37 .................................... CCTTTGTTTCGTAGATAGCCGGCGAGTAAACCCGCCA 5289 36 100.0 36 .................................... CGTCTCACCAGTCTCGGTGTCTGTGATCTCCACCGA 5361 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 5436 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 5511 36 91.7 0 ..........C....A..........G......... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 96.9 36 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : TGGGGGCGAACAACCGTTATTGGTGTCAACTTAACGTAAAACCCTTGTAATGACGTTAGAGCAAACTTACTCAATTACTAACTAATCGACAGTCACCCCACCCCGGTTTTGTCTAAAGCCAAAACCTCCCCTCCCCGCCTGCGGGGAGGGGATTGAGGGGTGGGGTAAAATGGCTGTGGGACAAGCGTTTAAGCTTAAGTTGACACCAATGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTAAAATCATGTGTTGCGATGTGTTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAACCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGGGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCAGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : | # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 15850-17537 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000054.1 Nostoc linckia z7 scaffold56.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 15850 37 100.0 34 ..................................... AATGACCCAGAGCTTCAGGCAATGCAACAACATT 15921 37 100.0 33 ..................................... AGATAATTTCTAATGACACAACTTAAGCCAGTT 15991 37 100.0 41 ..................................... TTGTGGGTAGGGATTAATCAAATCTTTGTAGCGATTGTAGG 16069 37 100.0 37 ..................................... ATGCCCCTCTGGGTTGCTTACATGACCTTTAGGCGCA 16143 37 100.0 33 ..................................... AAAAGGATAATGGCTAATGGAACCTTCCTTGCT 16213 37 100.0 34 ..................................... AGAGAATGCAGAGGACTTATACTTGATGAATCTG 16284 37 100.0 34 ..................................... CCATATTTATTATCCTTTTAATATAAATTATTAA 16355 37 100.0 36 ..................................... AATATTAACTTGCAAGGAGAGGACAATTTATCACAA 16428 37 100.0 35 ..................................... AAATCAGAAAAATTAATATACTCAAATCCCCAATC 16500 37 100.0 34 ..................................... AATATCAAATCTGCTGTATTAGCAATCTCTAAAT 16571 37 100.0 33 ..................................... ATCTGCTCTTACTTGAGAAACTGTTCCCGCTTC 16641 37 100.0 34 ..................................... AAGTACTGAGCGGTTCCCTGGCTACTACGATCGG 16712 37 100.0 35 ..................................... ACAGACCTTACAAGTGTACCTGTAACCCGTGGAAG 16784 37 100.0 34 ..................................... CTGGCTCAGGCTGCCACTTAATCACCACAAAAAT 16855 37 100.0 34 ..................................... TTGGAAGATGATATTAGAATCGTCGAGGGAGCGA 16926 37 100.0 33 ..................................... ACCTACCACCAGGAATGATTTGAGGGCATTGCC 16996 37 100.0 40 ..................................... CTTTGTAGAACAAATTGCGCTGTTCGACCCTGACATCAAA 17073 37 100.0 35 ..................................... ATCATGTTGAGCACCCTATCTAAGTGCAGCCAATT 17145 37 100.0 32 ..................................... ATCTTGTGTGGCATCTCCTTCCTCGGCCCCCA 17214 37 100.0 38 ..................................... CATAGGGTTTATGCGAGCGAGTGTTGCTAGCGCTTTGG 17289 37 100.0 33 ..................................... GGCTAACCAGAATTAAGCAGAAACCGACTACTA 17359 37 100.0 34 ..................................... ATAAAGCACGAGCATCGGATCGATACTTGGCACT 17430 37 100.0 34 ..................................... GATTTTAATACTTATCGCCAAAAATTTAAGGCGG 17501 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 100.0 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCTTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTAGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCAATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : CTCTGATTTTTGAGTTTGTACGAAATAAAAGCCTTGAAGTTACGCGGATTCTCAATGCAGAGGAAGATATAGCAAGCATTTGAGAACAAGAGGTCTATTGAATAGCGATCGCCATTATGATTGTATCGGTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTTAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTATTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAAGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 3426-1496 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000123.1 Nostoc linckia z7 scaffold136.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3425 37 100.0 34 ..................................... ATCAAAAAGCCCTGGAATGCTTTACACGTTCCAG 3354 37 100.0 33 ..................................... ATTCTGCTGTGCCGAATGTCAAGCCGCCGTCAT 3284 37 100.0 35 ..................................... TAACCTTGGATAAATCTGTCCTACTGTTGGAAGTG 3212 37 100.0 34 ..................................... ATCTCGCCGATTGGTTGAATTAACACCTACACTT 3141 37 100.0 38 ..................................... TCAATCAAGGCTTTCAAATCCTGTTGTCTATGTTCAGA 3066 37 100.0 35 ..................................... AAAAAGTCACTCTTTAAACGTCTTACATTTAACAA 2994 37 100.0 33 ..................................... CAACAGTTACATCCCAAATTACTAGCGCTTTAA 2924 37 100.0 37 ..................................... ACACGCTCGAACGGCTTGCACGTCAACAGCAAACACT 2850 37 100.0 35 ..................................... AGTATAGTTGCACCCTGGATTAATAAAGAAAATAA 2778 37 100.0 36 ..................................... TTTCATTAGAAACACTAGCTTATATACCGTACTTTG 2705 37 100.0 35 ..................................... TTTAAGTTCTATACCTGAGATTGATGTATGACAAC 2633 37 100.0 37 ..................................... ATAACCTTCCTATTTCGTAATTACCAAATCCAAATAA 2559 37 100.0 34 ..................................... TCTAGAAGATTAGGACAAAGATAAAATATAAGTG 2488 37 100.0 38 ..................................... ACTTATATAAAATCTCTATATACCCGGTTAACCCCAAA 2413 37 100.0 37 ..................................... AATATAGAGGGCAATTAGGGGCTTATTGGTGTGCTAG 2339 37 100.0 37 ..................................... GATAATATGTTTTCTGGTTTTTCAGTAATATATACCC 2265 37 100.0 34 ..................................... TCTCGGCTGACATCTCCCAAAAGTTATCTTGATT 2194 37 97.3 37 .................K................... GTTTTACCACTTCCGTCTAATCCTTCAAATGCGATCC 2120 37 100.0 36 ..................................... TGAGGTATCCGCCATTGCTTCGGGCTTCTGACTGAA 2047 37 100.0 37 ..................................... TCTTTCATTGATGTGCGCTATCTCTACTGGACTAGGA 1973 37 100.0 35 ..................................... TCTTTGCTGGTGGGACAATCTGTAATTCGTGGTGA 1901 37 100.0 37 ..................................... TTAATTCTGTTTGTGCTTGTCTCACTTGCTCTTTTAA 1827 37 100.0 37 ..................................... AATTTTTACCGTTTTTACGTGATTCAAGAATTTCTAA 1753 37 97.3 34 .............C....................... ACTGATAACTGATTACTAATAAAACTATTGTGAT 1682 37 100.0 36 ..................................... ACGATAATTTTGTTCTTGAGGATGTCTCGGCTATTC 1609 37 100.0 40 ..................................... GGCTCAACTACTTACTCAGTGGCCGGTTTGCCTGATGCGA 1532 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 99.8 36 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ACATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGCGTATTTGAATGTTTTTTGACCGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATCTTATGATGTTTGACTGTTGATTGTTGACTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATGCTAGTAAAGTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAATTGAATATTTTTAGCGTTTTGAGTTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : AGCTATGGCAGATATAACAAACCACAGGACAAACTTTCAATTTCAATGAAACCCGATCGCTCTATTACAACCAAAAATCTCAACACTAGGCAAAATAGAACTGAAAACGGTTTTCAAATTATCATAATTAAAAATTCCCATGCTTCAAAGTCAGCGTTTATCATAAATAAAAAAATTATTTATTATGAATGCTGAAGATTTTTTCCACCAAGGATTAAACAAAAATTTGCAAGGGGAATACCAAGCAGCCGTTACAGCTTACACCCAAGCAATTAATCTCAATCCAAATTACGCCGAAGCATACCATAATCGAGGAATTATTTCAAGTAGTCTCACAGATTATCACAGTGCGATCGCCAATTTTAATCGCGCCATTGAAATCAATCCCAATTTTGCCACAGCCTACTATCACCGCGCTAATGCACGCTACTTTCTAGGAGATTACGAACAAGCCATCGCTGACCATAACCAAGCATTGGCAATTGACCCCAATCTCGCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 14859-18002 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000123.1 Nostoc linckia z7 scaffold136.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 14859 37 100.0 35 ..................................... ATCACTATGCATAGCCGTTCAACATAGTCAAAACA 14931 37 100.0 35 ..................................... AAAACTTAGGGTGAGTTTGCCAAACAGTGTCACCA 15003 37 100.0 39 ..................................... TGAAATGATTGGTTATAGGTTCCATTACACACCAGCCAT 15079 37 100.0 36 ..................................... AAAATCTTACCGTGATTTATACTCTGAAGGTGTTAT 15152 37 100.0 39 ..................................... AAACATCCTATGTAATTGTCAACTATTGGCACGGTTTAA 15228 37 100.0 37 ..................................... GTGAAGCTACACCCTACGAACTGCTAACAGATCCTAA 15302 37 100.0 37 ..................................... ACTTGCCACCGGCACCAGGATGAATCTCAAGAATGGA 15376 37 100.0 39 ..................................... AACTTATGAAGGGTATGATTGTCTTATTCCAGTTAAGGA 15452 37 100.0 39 ..................................... AATGAGAGAAGACAAGCAGCACAAGAGCTATGAATGGCA 15528 37 100.0 36 ..................................... AACCTCGATAAAAATGGTAGGCCTATTGCAACTCAG 15601 37 100.0 39 ..................................... TGGGTACTGTGGGAAGTCTTACAGCGGGGATGCTTGGGA 15677 37 100.0 40 ..................................... AATTTTCCACCGTGATTTGTACGCCCAGAGTGGGCATAAA 15754 37 100.0 38 ..................................... TGGTCGAAGTATCTTCAGCGCCGCCGTCGCTACCCCAG 15829 37 100.0 36 ..................................... ATAAATAGCATCTGCAAGCTTGTTATCAGCAATCAA 15902 37 100.0 39 ..................................... AAAATCAGACCCCATCGTGGGAGTACGCATTCACAACCA 15978 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 16051 37 100.0 36 ..................................... ATAACATAACCTATATTGGAAGTGACAACTATTTAC 16124 37 100.0 37 ..................................... ATATGGATCTGGAGTACCGTACTCGTTCGGATACGGA 16198 37 100.0 39 ..................................... ACTAAACTGTGGCTTGCGGGGGAACCTCCAGCACCAACA 16274 37 100.0 37 ..................................... AACTCTTCAAAGTCTTTGTACCCACCTTGGGGTTTAT 16348 37 100.0 36 ..................................... GATAAGTTATGGCACTCGTTAAATATAAGTGACTTA 16421 37 100.0 33 ..................................... ACTTACAAAACTCTGCAATGTTTGAAAACTTAG 16491 37 100.0 37 ..................................... GTCCTGAACAATTTATCGCCGATTTTGACGAATCGAC 16565 37 100.0 37 ..................................... ATTATCCCCTTTATTCCATTGATTCTTCAAATACCAG 16639 37 100.0 37 ..................................... GATTCCGCTTGTCTTTTTTACCAGTAAGGGCGATCGC 16713 37 100.0 35 ..................................... TTGAAGCGTAAAAACGAGTATTAGAAGAATCTACC 16785 37 100.0 38 ..................................... AATCAAAGAGCATTATCACATGATTAATATCACTGGCA 16860 37 100.0 36 ..................................... CTTTAGCGTGAGTGATAGCTCTATCTGTCAGAACAT 16933 37 100.0 36 ..................................... CAGCCCGTAACCCGATCGCTGATCGAAGAATAGTTG 17006 37 100.0 39 ..................................... TTTTGTGGTTATGTACGGTTTTTGTGTTGCGATCGTAAT 17082 37 100.0 37 ..................................... CGCCAGATGCTAAACACCCTGCATATGAGTATGCCAA 17156 37 100.0 36 ..................................... ATCGCATCCTAGATATAGATGTCGGCGTCACCCCTA 17229 37 100.0 40 ..................................... TATGCAGAGCATCTAATACCGTACCCCACACGCACCTAAA 17306 37 100.0 37 ..................................... AACCGCCTTGACGGACAAGTTCGCTACATTACCGATC 17380 37 100.0 36 ..................................... CAGTGTGATTGTGGCAGGATCGTTGAAGCAACTAGA 17453 37 100.0 34 ..................................... TGAAGTTTATACCCAAGTTACCGAGGCGGTTTAC 17524 37 100.0 36 ..................................... ATCGCTGATTACTAATCCAAAGAGCAATTATTCCTC 17597 37 100.0 37 ..................................... CGGATCTAAAACTTGGAGCGACGATGACTTGCACTGG 17671 37 100.0 38 ..................................... ATTCAATGGGCGACTGATTGGGGAATCGCCACCGGACT 17746 37 100.0 38 ..................................... GTTGGTGTGGGAAGTTGTCGCTCTGGCGTAGATCGTTG 17821 37 100.0 38 ..................................... TAGCATGGATGAAAAACAAGGCACGGAACCCAACTTGA 17896 37 100.0 33 ..................................... CAACAATTCGACAAGATATTGCAACCTGGGCAG 17966 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 99.9 37 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAGAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAGAGGGGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTATTTGCACCCAGTTTAGTACTGGTTTCGGGAATATTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGACCCTAGATAACTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTGGAGTATTGTTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATCACTAGGTTCTGGCTGGCGGA # Right flank : CAAAATAAAGAGTGCTAGATTTTCACTTAGCACTGTCAAGATTTTTAATTTATCTACTATTTTTGACCTTGATTAACTCTTTTTTCCAATTCAGCTTCAGCCTCTTCAATCGACATTAGTCTTGGATTTGGATTAGCCGCGTGCAAGCGATCGACATAAGCATGAAAAGCTTCAGTATTTTCCGGATTTTGCAATACGTAAGCTCGTAATTCAGCATCCGTCATGTTTGCAAAATTGGGCTGTGTCATTTTGTAACCACCTCCCCGTTAGGATAAATTTCTATCTCTATTGTCTCTTTGACTCAATACGGTTCAGTTAAGGCTAAAACTCTTTGTAAAGATTAATTTTTTTAACGAACCGCAGAGGCGCAGAGAACGCAGAGAGAAAGAGAAAATGCTTAACTGAACTGTATTGCTTTTTGACTAACGTTACTATGCGTTTTGTCCTTTCGTCCATTCGCACTAGATTTATTGGTCGCAGCAGATTGCTCATTCTCACCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 56318-54892 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000016.1 Nostoc linckia z7 scaffold16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 56317 37 100.0 38 ..................................... ACTTCAAAAGTGCTTACGTGGTTTGGGAACCTGAAAGG 56242 37 100.0 36 ..................................... GTTTCTATTTTAACCGTACTTATACGGATTAATGTT 56169 37 100.0 37 ..................................... TTTTTCAAAAATTTTAAAAATTATCACCACCCTGGAA 56095 37 100.0 38 ..................................... ACTCAAGACGCGATGCCAAAAGGTATCAATMTAGATTA 56020 37 100.0 37 ..................................... AATATACGTAGGCTTTCTGAACTCAATGATTTTATGC 55946 37 100.0 40 ..................................... AATTATTCATCTCGCTTCGGTCTTTATTGGATATTTACAA 55869 37 100.0 37 ..................................... GATTCAACGACATTATATAAACGGGCAAATAATTATT 55795 37 100.0 36 ..................................... TTATCAAAACTGCAACCGAAATAAACGCAATCACTA 55722 37 100.0 34 ..................................... TAACATCTAAAGAGGATGTAGTTCCAGGGGCTGT 55651 37 100.0 36 ..................................... CTGCTGGTTCTACCCTTGGTGGGTGGGGTGGTGCAA 55578 37 100.0 34 ..................................... GTAGAACTCCGGGCTATGCAGCTGTACAAGCTGA 55507 37 100.0 35 ..................................... CTGTGCTTACAAATCCATTGCCTGCTGGGGCTTCG 55435 37 100.0 33 ..................................... AACCAAGATGGAGATTCGTAAAAATTGAGGGGA 55365 37 100.0 38 ..................................... AACAAGCAACCCAATTAGCATCCCTGGTCTTCCACTCA 55290 37 100.0 37 ..................................... TTCAAAAATACTTAAAACCCAATGAATCAGAAGCCGC 55216 37 100.0 37 ..................................... GAAACCCTCAATTCACATGCCCCGCACGGTTAGTCGG 55142 35 91.9 34 ............................A..--.... GAGGGACACACAAAAAACAAAAGCAATCAGAAGT 55073 37 70.3 37 A..........GT..T...T..C..AT..T..A...T CAGGAAAAATGAGACTTTGCTCGATAATACTTTTTAC 54999 37 73.0 33 ....A..A.G.AT...T........AA...C...G.. GATGTTTGGAAATTGACAATTTTTTTGGAGAGA 54929 37 70.3 0 ....T..A..TT...TT.AAA.T...T.......... | C [54923] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 95.3 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCGGCTTACGATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAGAATGAAAATATTCAATAGCGCCGCAGTTCATACTTGTTACAAGTCTCTGTGCTGCGTAAATGTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCCCTGGCACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACCAGCGATTTTGGGAGACATGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGAGTTTGAAGCGCAGA # Right flank : ATTGGTAAAAGTCATGGAATTCTTGGACTAATAGGACAAAAACTTGTCAACTTACAGCAATTTTCATTTCTTTGAACCACAAATCCCCATAGGGGGGTAAGGTCTTGCTGGCAAGGTTGATGTATGACAGTAACACACCACGCTGAAAAGTTTAACGATATTTTTAACGATATTATTTTGTTAATGGTTAGCTAACACAATTGGATTACATAGTGAATGCGGACATTATTTTGGCAATACTGACATTAATTTGTCAACGCGGACAAATAATTTGGCAATCGACAACAGTCAACAGTCACCAACTTTCATCGAACTCACGTTAAGTTAAATTCCGTGACTTTTACCAATTACCCAATTACGTCGGAAAAAACGAGCTAAGGCTGACTCTTCTAGTGATAAATAAATTGGGCGTCCGTGGGGACAGGTGCGGGGGTTGCGAGTGCGTTGCCAATCATCTAAAAGTGTCTGCATTTGTTGTAGATTCAATGGCGTACCGTTCC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10919-10445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000160.1 Nostoc linckia z7 scaffold207.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 10918 35 100.0 38 ................................... ACGATCTGTTCCAGATGTTCCCCAAACATTTACAGATG 10845 35 100.0 39 ................................... GACTGAGAAAAAAGGAAAAAACTAAGCCATAAGCTACCT 10771 35 100.0 39 ................................... TAGAGCGTTCCTTCTCTGACAAAAGTCGAAGCAGTCCAG 10697 35 100.0 37 ................................... TTAACTGAAACTCGTTGAAAGTTTCATGGGTTAGGGT 10625 35 100.0 37 ................................... AGTTCAAAATCCAGGTACGGCTGAAAGACATACTGAT 10553 35 100.0 39 ................................... CCTTGAATTCTCTTTACTAATTGAGATGATAATGGCAGA 10479 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAGTTTGTAGTAAGCACTTCAGTGCTTAAAAATCAAGGACTAAAGTCCTAACTACAAACTTATTTTACCCCTTAGAACTAATGCGATAGACCACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCATCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAAGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATGCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGCGTTTATTGCTAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTAGAAGGCTACC # Right flank : GTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAACACCTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATTCATCACGTCTTTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 53201-53893 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000020.1 Nostoc linckia z7 scaffold20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 53201 36 97.2 38 ...............C.................... CTTTTGGTTGCTGCACTGTTTCCACAGTTATGTCTCTG 53275 36 97.2 37 ...............C.................... CCCTAGGCCGCAAGCGCCTAGTAATACCCTCAACCCG 53348 36 97.2 37 ...............C.................... ATTAGAGCTGAGTAGACCGCGTCAATATGACCGGCCA 53421 36 97.2 42 ...............C.................... TCAAGCATATCAAAATCTGAAACTAAGACTACTTTATGACGA 53499 36 100.0 34 .................................... AATTTTGCTACGAATTGACCGCATGTAAAATCTG 53569 36 100.0 35 .................................... GTTTTCTACTCCACTGGTCTCTTTTGTGTCCTTCC 53640 36 97.2 39 .............T...................... AATCAAGAACAAACTTTCCTTCCGCATTTTTCCCTAGAA 53715 36 100.0 34 .................................... TGAACTTCCTTCAAAGTCGGGTTTTCAACCAATA 53785 36 100.0 37 .................................... TTGTCACTGTTGACGACAGCGCTCAACCAGTTAGGCC 53858 36 97.2 0 .......A............................ | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 98.3 37 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACACAGGCTTAATTTCTTCCAGCGCATCTTTTAAGCTAGCAGCGGCTGACACAAGTATGTTGTTTGACTGGGCGACTACACGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAGAATTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATACTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCTTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATACCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTGTGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : CTTCTTGCTGTTGAGATGCGGTGCAACATCATAACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTCAGCAAGAGCGATAGTTTAATAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTGTAGACAGGAATTCATCATACAACAACTCAAGAAAATACGAATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTGGCTTCATCGCGTTTTAGAGTTGGCAATGTACCCGTAATTACGAAAGTTTTTCCAGCAAACTTTTCATTAATATTATTAACTGTTTCTGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTCCCTCAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 9912-11188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000161.1 Nostoc linckia z7 scaffold209.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 9912 36 100.0 37 .................................... CTAATGAAGTTTGGTAAAGAAAGGGTTTCAACTAATT 9985 36 100.0 32 .................................... TTAAAGATTTTTAGTTCAACAATTATGCCAAA 10053 36 100.0 36 .................................... TTTATTGCGTTCCGGATTACCAATATTTTGGATGGA 10125 36 100.0 37 .................................... AGACTGAGTTGTGGTTGCCACAATCACCAGTAGGAAG 10198 36 100.0 37 .................................... ATATTCTTGTAATTGATTTTCAAGGATTAATGCACTA 10271 36 100.0 37 .................................... ATTAAGCCAAATGTTGCCTTAAGGTTTTCTTCAACCC 10344 36 100.0 39 .................................... TTCTTGATTCCCCCAGTAGAGAAGCGAGATTTCGTCCGG 10419 36 100.0 35 .................................... CTTGCTGGTTCCAAATCTGCGAGATTTGCCTTTAT 10490 36 100.0 37 .................................... ACGAGCAGTCCTGCGGTTGAACAGCATACAGCGTGTG 10563 36 100.0 36 .................................... GATTGATGTAAACATAAACATTAAACTCTTGAACAA 10635 36 100.0 40 .................................... AGCATTGAATGGTTGGTCGGGTTCCCATGAACCGCAACCG 10711 36 100.0 41 .................................... TTGCAGTAGTAGCAACTGCGCTGTTGGCGACTGCATTTAGC 10788 36 100.0 36 .................................... AATGTTATAAGCAATCCTCCAACATCACCTTGTATG 10860 36 97.2 37 ..........C......................... ATTATGGTTGCTTCAAAATCGTTTTCGCAGTCTCTGT 10933 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAACGCGGTTTTTTA 11006 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAATGCGGTTTTTTA 11079 36 97.2 38 ..........C......................... TCAAATTCTTCACTGGTAACTTGACACTCACCCATTGC 11153 36 83.3 0 T.........C..TAA...................T | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.5 37 CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Left flank : GACACCCATCCCACAATAAACAATGTTTTTAAGTAGATGGACATAAATAAATATAATATGTTCTGTCATTGCGTTCGCGTAGCGTCTCGTAGAGAGCGAAGCGAAGCAATCCCAGAGACTTTGCGATTGCTTCGCTTCGCTCGCAATGACATCTTAGATTTAATCATGACTATCTACTTAGTTGCGCCTTAGCACCTTCCAAACAATAAAGCTAATGCACAACTTTAGTCTAGACACGCCACTACCTTTTCTAATGAGGAAGATTTATCTCACGCAAAGGCGCATAGTCGCACAGAAGATGAGGAGTTTTAGATGTTCATCGACACCAGTCGGGAAATTGCCAAAACACTATATTTTTCGTTGAGTGGTGTCGATTCCTTGCTGCGTAACGATTTGAGGTATGTGTGTTGTTGAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : TCTATCGAAAAGCCAGATCCCCGACTTCTAAGTCTGGGATCTTTTTTTTCACGAAGGATTTAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATCATCTCGCCAGAATTACCCATTGGTACTAATGGACTTTACTCGCCAACGTTAGCCCAGCCAATGACTTACAAATAATGAATTGTGCTGGTAAGTAGGTCAACTTAATTAAACATAAAACAATGGTAGGGTGCGTTATCGCAAAGCGTAACGCACCTCAATTGCTATAGTACAGTCTACAGAGGTGCGTTAGCCTACGGCATAAGACACCCTACATTTATTGACATCTACGTATGACGTTTTTTTAGGTTGAGCTACTTAACGGCTTTTACATAACCTATCAATGTATTGCCTAAACTAACGTAATTTTTCGTTAGCTAACCATTTAAACTACTTATCCTAACGTTGCAAAAAAGCAATAAACTGTTACAACATCAAACGATGTAGAATTTTTGTTGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCCCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 36817-35813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHC01000023.1 Nostoc linckia z7 scaffold23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 36816 37 100.0 35 ..................................... GAAATATCCACCCCAACCTACAACATGATGCCAGT 36744 37 100.0 36 ..................................... TATCTAACAGATCTTTATCTTCTATATTAATTTCAA 36671 37 100.0 37 ..................................... TTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGG 36597 37 100.0 39 ..................................... GGCATCAATAAGGGAATTATTACTATATACATAAAGGAA 36521 37 100.0 34 ..................................... TGATTGCTTTCACGTTGCTGGCATAGTTAGCAAC 36450 37 100.0 36 ..................................... CCTGATTTGGCAGGTGTCCAATCTAAGGATGACCAA 36377 37 100.0 35 ..................................... ATTGCTCAGGGGTAAATCGGAGTCGGCGCGGTATT 36305 37 100.0 36 ..................................... GTCTTTAGCCCCAGATGTTGCTCCATCCAAATAAGA 36232 37 100.0 47 ..................................... TTGATTTGGGTGATGCGATCGTTTAGCCCATCTTTGATGTAGTCAGC 36148 37 100.0 34 ..................................... TCTTAAAGTAGAAATTGAACTTACCGATAAGTTC 36077 37 97.3 37 ......................T.............. GAATTGATTTTGTGCTGGAGTTCTGGCTCTTGGAGCA 36003 37 100.0 37 ..................................... TAAAGTTTCACCATTTACTCTGTACAGATGGGGTGAA 35929 37 100.0 43 ..................................... TTTTCCAAAGATACACATGCAAAAATGTGCATATCAGTCACAG 35849 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 14 37 99.8 37 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : AGAGTGAACACAGCCCAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGAGTAATGAGTTATGACTGTTGACTGGGGGTTTTAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGACAGTAGAATATTTTAGGCTGAAATCTTTACTGTGATTGTATTTGAGCGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAACGTTGTGTTACAAGGTTTTCAAGGATTTTTGTTTAACCAAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : ATACGTTCAGAAATTATAAACCCGCTTAAGCGGGTTTGTTTGTTTAGATACTATCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTTTGCGTCCTTTGCGGTTCGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTAGTCTATAATCCAATACACTTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGATAGTCCTCTGCCTTTCTTGATAAATAGAAGAACTAAATTAAACCTAACTCGATATCGCCGGGTTTCCACACTTCGACAGGCTCCCTTCGACAAGCTCACGGCGGCGCAGTGCATCGCTGCACTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGCAAAGTCGAAATGCGTCTTCTAAATAATTGTGTCCACCTACTTCAACTAAACCTTATTTAAAATTCTGAATTCTGACTCCTGACTCCTGACTCCTGACTCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //