Array 1 1956-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOAX010000051.1 Lacticaseibacillus paracasei strain 1001270B_150601_G2 NODE_51_length_11654_cov_6.16864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1955 28 100.0 33 ............................ TGAACGCGGTTCTAATGTCTGACAACAACGGCG 1894 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 1833 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 1772 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 1711 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 1650 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 1589 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 1528 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 1467 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 1406 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 1345 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 1284 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 1223 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 1162 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 1101 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 1040 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 979 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 918 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 857 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 796 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 734 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 673 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 612 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 551 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 490 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 429 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 368 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 307 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 246 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 185 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 124 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //