Array 1 11107-11374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIM01000032.1 Xanthomonas sp. MUS 060 XANALMUS060032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11107 28 92.9 32 ...A.........C.............. CGGAAGCCGCAGCGGAGCGCAGAGCTGGCCGC 11167 28 100.0 32 ............................ TCGATGATCTGCTCGGGGGCGAATTCAGCGGG 11227 28 100.0 32 ............................ TTGACGGGCGCATCGACCGGTGCGCGCAAGAC 11287 28 100.0 32 ............................ ACAGTGGCATCCGCATCCTGGAACTCGTCGTC 11347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCTGTGGCGGTGGATCACATCGTCCCAAAGTCACTCGGCGGCACCGATCATCCAAACAACTGTCAGGCGATCTGTCATCGCTGTCACGTACTCAAGACGGCGCAGGAGTGGCGTCAGGGACGCGAAGATGCTGGATGAAGACAATCTGGACAGATGCACAATGACAACGGTCATGGCATGCTCGATTCACTGCCGTGTAGGCCGCTCAGAGAACTGTCTGCACTCGCATTTAGCCATGGCGCTATTATCTGGGAGCCAATGTTGGCAATAGGAAGAGGGGTTCTACATGAAAGCTATTTTGCTAGCGGCAGCACTGATGGCTGCTATCGCCCCAGCGTTTGCGGATGTTCACGTGCGCGGCTATCACCGTTCGAACGGCACATATGTAAGGTCGCACCATAGAAGCTCCCCCAGCCATAACCACACCAGCCACTCCCACCGGAGTCGATAATTCTGAGGATT # Right flank : ATTTCAGCTTCGCCCTAGGCAGCGGTCACGGGGGTGGTTACTGCGCCGACCATCAACGTGACAAGGTGGGATGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGAAGTGGCAGAAACTTCGCGCCGTCGTCATGCAGCGCGATCAAGGACTGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCTGTGGCGGTGGATCACATCGTCCCAAAGTCACTCGGCGGCACCGATCATCCAAACAACTGTCAGGCGATCTGTCATCGCTGTCACGTACTCAAGACGGCGCAGGAGTGGCGTCAGGGACGCGAAGATGCTGGATGAAGACAATCTGGACAGATGCACAATGACAACGGTCATGGCATGCTCGATTCACTGCCGTGTAGGCCGCTCAGAGAACTGTCTGCACTCGCATTTAGCCATGGCGCTATTATCTGGGAGCCAATGTTGGCAATAGGAAGAGGGGTTCTACATGAAAGCTATTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12036-12364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIM01000032.1 Xanthomonas sp. MUS 060 XANALMUS060032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12036 28 92.9 32 ...A.........C.............. CGGAAGCCGCAGCGGAGCGCAGAGCTGGCCGC 12096 28 100.0 32 ............................ TCGATGATCTGCTCGGGGGCGAATTCAGCGGG 12156 28 100.0 32 ............................ TTGACGGGCGCATCGACCGGTGCGCGCAAGAC 12216 28 100.0 32 ............................ ACAGTGGCATCCGCATCCTGGAACTCGTCGTC 12276 28 100.0 32 ............................ TTTCAGCTTCGCCCTAGGCAGCGGTCACGGGG 12336 28 89.3 0 ...........CA............C.. | A [12359] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCTGTGGCGGTGGATCACATCGTCCCAAAGTCACTCGGCGGCACCGATCATCCAAACAACTGTCAGGCGATCTGTCATCGCTGTCACGTACTCAAGACGGCGCAGGAGTGGCGTCAGGGACGCGAAGATGCTGGATGAAGACAATCTGGACAGATGCACAATGACAACGGTCATGGCATGCTCGATTCACTGCCGTGTAGGCCGCTCAGAGAACTGTCTGCACTCGCATTTAGCCATGGCGCTATTATCTGGGAGCCAATGTTGGCAATAGGAAGAGGGGTTCTACATGAAAGCTATTTTGCTAGCGGCAGCACTGATGGCTGCTATCGCCCCAGCGTTTGCGGATGTTCACGTGCGCGGCTATCACCGTTCGAACGGCACATATGTAAGGTCGCACCATAGAAGCTCCCCCAGCCATAACCACACCAGCCACTCCCACCGGAGTCGATAATTCTGAGGATT # Right flank : ATGCTCGGGGCATCAACCGGACCCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCGCGCGTGCAAAATGAAACAGGGGGGGGGCCCCCTGCAAGGAATCAATATGGCCGGACGAAAGCGTCTTCCAACCACCGTCAAGCAGATCAAAGGCACGCTACAAAAGTGCCGCACCAATCTAGGCGAACCCAAGCCACAAGGTGATCTGACAGAGCCACCCGACTATATGAGCGAGGGAGCGAAGTCAGCCTGGCGCTACGCACTGGAATGCGCACCACCGCATCTGCTCAAGCGTCTGGACATGTCGGTGCTGGAAGTGTGGGCCTGCGCCGCTGATCTGTATCGCAAGGCACAGACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCGCCTAACACCGGCGTGCCGATGCAGTCACCGTATCTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAGGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 227708-228635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIM01000004.1 Xanthomonas sp. MUS 060 XANALMUS060004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227708 28 100.0 32 ............................ TGCGCGTGGCCCGTGAGATTTGCCGCGAATCG 227768 28 100.0 32 ............................ AACCCCGGCATGACAAGCTACGAGCTATCGCG 227828 28 100.0 32 ............................ AGTTCCGCCATGTCCCAGGCCAATCGGCCTTC 227888 28 100.0 32 ............................ CACACCTCGGCAGATGGCTTGCGCTCTCCCAG 227948 28 100.0 32 ............................ CAACGTCACGACGTTGGTGCGCATCGGAGGAA 228008 28 100.0 32 ............................ GGCTGTGAGCGCGATTACTGCTGCCAGTGCGT 228068 28 100.0 32 ............................ AGCAATGAGTGGGCAAATTGATACGTTCGGAA 228128 28 100.0 32 ............................ TTCTCCGCGCTCGCTGCATATCAACTTGTCGC 228188 28 100.0 32 ............................ CGCCGCAATTGATCGAGGCGTACATCCGTGGG 228248 28 100.0 32 ............................ TCAGTTCGGCAGCCAGCCGATCCAGCATGGCT 228308 28 100.0 32 ............................ AAAGGATCGCGATGAAGCCATTCGTCGCGTGG 228368 28 100.0 32 ............................ TGATGGGCCGCCGCGTGCGCGCCGAAGGGTAG 228428 28 100.0 32 ............................ ACGAATGTCACGACGACGGACGGGGCTGCGCT 228488 28 100.0 32 ............................ TACGACCTTGCCGTTCTCATCACGCATGTTCG 228548 28 100.0 32 ............................ TTGCCCGTATCTCCTTGACCCACTGCTGATGC 228608 28 92.9 0 ..........A..........C...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTTGCAGGAACTGATGGTAACCAATTGGCTGCATGGTATGGGCGACCATATGACCATCACAAACATCGGTGCCGTGCCACCGGATGCCGTGCACCGACACGTAACGCGCGTACAGGCCAAGAGCAGCCCCGCCCGCCTGCGTCGGCGGGCCATGCGCCGACATGGCATCAGTGAGGATCTTGCCGTCCAACGCATTCCGGATTCGGCGGCCGAACAGGTGCGACTTCCGTTCGTCGTCCTGGGCAGCCGCAGCACCGGCCAAGCCGCGTTCCCGGTATTCGTCAGGCATGGCCCCGTACAGCAAGAACCCGTCGCTGGCGACTTCAGCAGCTATGGACTCAGCCGGGGAGCGACCGTTCCCTGGTTCTGACCCTTTTTTCTCACATCCAAACCCACCAAGAAAAAACAAGCACTTAGCAGCCGCCCAAGAAAAAGGGGTCGGCTGCTTTTCTTTACCCGTTTACCTTCCAGTTCAAAGACTTGGATAATAGGATGGCTA # Right flank : ACGATGCCACTGCCCGACAAGCACCGCCGACAGCGCGCATACACCACAACGAAAACGGGATGGCCACACGGCCATCCCGTTCTTGAACCCGGTTTCTTCCCAGGTGTGGGTTAGTTCTTCAAACCGCGATTCTCCAGCAACGGCTCGACGCTGGGGTCCTTGCCACGGAAGTCGCGGTACAAGGTGGCCAAGTCGACACTGTTGCCGCGAGAAAGGATCTTGGCACGGAAGATATCGCCGTTCTTGCGCGACAGGCCACCGTTCTCCTTGAACCACTGGAACGCGTCGTCATCGAGCACTTCCGCCCAGAAGTAGGCGTAGTAATTCGCCGAGTAGCCGCCACCCCAAATGTGTTCGAAGTAGGTGGTGTGATAACGCGGCGGTACTTGCGCCAAATCCACTTTGTATTTCTTCAGCGCGTCGGCTTCGAACTTGTCCACGTCCTGCAGCGACGCATCGGCCGGTAGCGTGTGCCAAGCCAAGTCAAGCAGCGCTGCCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //