Array 1 40129-42348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000005.1 Planktothrix agardhii 1813 1813_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 40129 36 100.0 35 .................................... CCCAGGAAACTATGGTATCAAATGTCGTTTCTTCA 40200 36 100.0 45 .................................... GTAGAAAGAATCCTATGTTGACCAGTAAGATTAATACTATTCGGA 40281 36 100.0 41 .................................... GAGCTACTGCCCTCCATGCACGTAATTACCTAATTATTAAG 40358 36 100.0 42 .................................... TTATACCAAGGTCTTTTTTCCCTAATGTGCATACAAAAGAAT 40436 36 100.0 45 .................................... TAAAGAAGTGTTTAATCCACTCTTCCACTAAGGGATGAACTTCCA 40517 36 100.0 45 .................................... TTTATATGTCCTAAGCGCTTAAGCTTAAGTAAGAATTGATATATA 40598 36 100.0 37 .................................... TATCTTCTATATCACCATACTTAATCTTTACATCAAG 40671 36 100.0 43 .................................... CGGAGGTAAAGCAAGAATTTGTTCGGGCTGAATTAATGGACGT 40750 36 100.0 42 .................................... ACTTCAAACCTTTTAACAAATACATGGCACTCACGCTGAGTA 40828 36 100.0 44 .................................... CAAGGGGTTTTACCCCCTCACCTAGTAAAAATCGCAAAAGAGAT 40908 36 100.0 43 .................................... TTTTTAAATGACAAACCTTGTTCAGTCTCGCCGCTTGCAAAAA 40987 36 100.0 38 .................................... TTCTTATGAAACTCATTATTACGAATCCCATTACCTTG 41061 36 100.0 46 .................................... CAAACATGGCATGATGTCGCCACAGAATCTCTTGTTCTGATGGGTA 41143 36 100.0 42 .................................... ACAAACTCCAAGGAAACTGGTGTTTCACTGGAATTGTTTTCG 41221 36 100.0 43 .................................... TAAATATTCTCAATACCTACACTCCTCAGTATTTTTACTGATG 41300 36 100.0 43 .................................... ACAGCCGTTAAGATTGTGTTATTAGAAGTTAATGATTTTGTGA 41379 36 100.0 44 .................................... GCTTCACAATAACGCTTTAAATCATCGAGGGAATAGTTGGGATA 41459 36 100.0 44 .................................... AAACATTGGCGGGTTTATAATCTTCAACAAAAATCACATCAAAC 41539 36 100.0 46 .................................... TTCCCAAGGAATTTACCAACTCTTGCAGTATGAATTCTCCAAGAAG 41621 36 100.0 35 .................................... TTTACCGGAGTTGAAATACACAGGGAATCTTTCTA 41692 36 100.0 46 .................................... TTGTAAAGTTTTTAAGACTTGCTTAAATTAAAAGTAAACAGTTCAT 41774 36 100.0 37 .................................... TCGAATAATACTTCTCCCACGTTATTCACACAAAACC 41847 36 100.0 46 .................................... AGTTAAAGGGACTTTACCTTCGACATACCCTTCAGCGTAATCGCCA 41929 36 100.0 39 .................................... ACTTAGAGCTGATATTACCACCCACTTTCACCGCAGGTT 42004 36 100.0 43 .................................... CCGTGTTCTGTGACAATTCTTTTCGCTTCCGTGATTGAATAAG 42083 36 100.0 40 .................................... TGTGCTTGAGCTAAAGCTAAGTAATCCTTATAGACCCATA 42159 36 100.0 40 .................................... ATTCAAAGTGGATGGGAAGATTATAGGTGTGGATATCACT 42235 36 100.0 43 .................................... TTGTTATTAGAACCTGGTGGTGTTGCCACTGTGTATAGTATTC 42314 35 86.1 0 ..T.........................A.-C.G.. | ========== ====== ====== ====== ==================================== ============================================== ================== 29 36 99.5 42 CTCCCTACTTGCTAGGGAAATTAATTGATTGGAAAC # Left flank : GAAGGATATAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTAATAAACGTCGCCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAAGCGAGTTCAATATTCAGTGTTTGAGTGTGTTTTGGCTCAATCGAAATATATTGAGTTACAGAAACGCTTAAAGAAACAAGTGAATTTGGCTGAAGATAATCTGCGGTTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTAAGGGGCCAGAGATTACTGAGTATCCGACTTCAATGATTGTCTAGGGCTGTTTGCGAAGCTGAAGCTTGAAGGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAAGGTTCTGAGATTTTGATCAAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTATCAGCCCCGCAAACCCCCCCCTAGACAACCGATGGCATCTGGGTTTAAAATGGGAGGA # Right flank : CCACACAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGCGGCGACATTGGATATGAAAGCTCAGGAACTTCTTGCGTAATTCGTGGGAGATACAGCAATAACTGAATAAACTCTAAAAACTTTGAGGATTGAATTCAATGAATTTACTGAAGAATAAAATTTATGGGTTTGGGTTTATTGCTATTACAGCAATTGTGTTCGGAGTTGCTAACAATTCCAGAGCGCAATCTCGTTGTGATAATACGCAAACTCAAGCTGATATGAATGGTTGTGCTATTGAGAGATATAAACAAGCCGATGCTCAACTCAATGCTGCTTATCAACGATTGACTTATATTATTTCTCCTGAACGAAAAGCAAAACTCACACAAGCTCAATTAGCTTGGATTCAATTTCGAGATAATCAATGTTTATTTGAATTAACGAATACTCGTGGTGGGCGCTCTAACGGTGTTGAAGGTTCAATGGCTCCTATCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTTGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 7606-8477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000015.1 Planktothrix agardhii 1813 1813_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 7606 37 100.0 45 ..................................... CCCTAAAACAACAATGGAAAAACCCCAAATTATTATCGGGAAAGA 7688 37 100.0 40 ..................................... ATACAAGCAGTAGAACAAACGTATGTTCTCTAAATTATCA 7765 37 100.0 36 ..................................... CCCGAAACCCATTTTAGTCTGCAAATTCGTTTCAAT 7838 37 100.0 35 ..................................... TAATTCCGCTCTTGTGTGAAATTGCGAAACGTCAT 7910 37 100.0 38 ..................................... CCAAAATCAGACTATCCAGAGATTGCCGAATTAGTTGT 7985 37 100.0 39 ..................................... GGCTAATAGAACAGGGATTAGAATTACATACTCTGAATC 8061 37 100.0 36 ..................................... AGTAACACCCTGGCAGAAGCCTGGACAATGTTGCGT 8134 37 100.0 47 ..................................... ACAAACAAAAATGAATTTGGACAAACGATTGACGGTGGTTTTGCTGT 8218 37 100.0 36 ..................................... AATCCCCAAGCCGGGGATGCCAGGAGCAGTAACAAT 8291 37 100.0 36 ..................................... AGATAAATTTGCAGGCCACAGCAATGCTCTATGGGA 8364 37 100.0 40 ..................................... CACTGACGAATTTAAAGTTCAAACCCGTGACATCGGGGGA 8441 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 12 37 100.0 39 GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Left flank : TTAAACTTGCCCGTGAAGTTAAGAGTATTGTCGATGACAAAGCAAAATATACAGACTGGTCACAGCGAGACGATATTAAAGCCGAATTAAAAGTTGCTTTGATTTTGGTTCTTGCTGAAAACGACTATCCGCCAGTTCCTAAAGATGAAGTATTTAAAGAGATTTTTGAACAAGCCGAAAATTTTAAAAAATATAATTAAGAGTAGCGTAGATGCTAGGGCTTGAGTAGCAACTGTGCGAAAAGTGCCGTTAAGCCCAAAACTCAGTTATATCAGTAGTTTCAGATGTTAACATTTCTAACGTTTTGTATATTGAAAAATGTACCAAACAAACTAAGGTTTCATTGGTACAGAAATTTAGTACCGTATCTCAAGGGTTTCAGCCTGGTTTTTTCAGGAAGGTTCAACTGGTACAGCGATTTCAACATCCTTAACGGCACTTTTCGCACAGTTGCTACTCAAACCCCGATCACAAAAGGATCAGGAAGATCAACAAAAAAG # Right flank : GACTGCCGCCTGAAACCCAGACAGACTAGGCATTCTGAAGCCACTTTTCGGGAACCTCATTTTTTGCCTCATTTCAGCCTTTGTTATTGCAATAAATTAGCAATAAATAACCGAACTCAAAAGTAAAAACTATTGAATTTTCAAGGTTCTAGCATTTTTCGGGAATCCCCCCAGGTTTTGGCTCCCGCTTTGATTCCCGAAATTTATAGTAAACCAAAGGCAATCCCTTGTCAATAGCGATTTTCTCATAACAATGGCATTATCTTGACGGGGTTGTTCAGAACCATAAGTAATCGTTCGCTTCAGAAATCTTCACCTAAAAGAAACCCGATTTCTTAATTACTGATTGATTTTTGTCTGACCCATTCCCATCGAAGTTTTACGTCCTACCCCAGCAAAACCAGCGAAATGAGATAAAGTTGTGGCAATTTGAGCTTGTTGAGGATCTAGAAATTGATAACGTATCCATCCTTTTGCCCCAATTTCGGGGTCAGATTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCGAACGGGATTCTATTAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 49778-51444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000001.1 Planktothrix agardhii 1813 1813_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 49778 37 100.0 36 ..................................... TTTTAGGATCTCGTTCAACTCCCCAAACAGACTTAA 49851 37 100.0 37 ..................................... CCTTTTTGCATGGCAATCCAGAGCATCTAATCGGAAA 49925 37 100.0 36 ..................................... CGGACGCTGCAATTAAGTTTTTATCGAGTTCAGTGA 49998 37 100.0 38 ..................................... AATGGCTCAAACACCGTCACAATCGGTGATTCAAATAT 50073 37 100.0 35 ..................................... GTTCGTGAGGCCTTACCATAAAAAATATCCTATAT 50145 37 100.0 35 ..................................... CTGCAATATTCCGCCCACCAGAGGGGAGAATGAAG 50217 37 100.0 37 ..................................... CTTAGATCAAGAAACCAAAATGACAACATACTTCTAC 50291 37 100.0 39 ..................................... GGCTATAGCTAACAATTGATCAACAATTGGGATCTCAAG 50367 37 100.0 38 ..................................... TTTGTGGCGATCAGGTTATTTAGAAATTCCTGATTTTT 50442 37 100.0 35 ..................................... ATGAATTTGATGCGCGACGGGTTTCATGACTACAA 50514 37 100.0 37 ..................................... TCTCAACGATTATACAACTGGCTGCAATCCGTTGAAA 50588 37 100.0 37 ..................................... CCACGGGTTCCCCCGTTCAATCTTCGCATTAAACAGA 50662 37 100.0 37 ..................................... GAATTGGTCAGATATTGGATCAATAATCCATCTTGAT 50736 37 100.0 35 ..................................... CATTTGCCTATCCATCGGGTGAGTTTAACGCCTTC 50808 37 100.0 37 ..................................... CCCGCAAAAATAGCACCCGTAATTCCCAAACTAGCTG 50882 37 100.0 40 ..................................... AATTCACCAACAAAGGATAGATACGCATCCGCACTAAAAG 50959 37 100.0 35 ..................................... TAACTCCAATCCCACTGACAGAACTTCCGTAACTT 51031 37 100.0 37 ..................................... TAATGATTAATAATGCTGATTTAAAGGTTTCATTTTT 51105 37 100.0 39 ..................................... TTCGATTTCTTTTTGAGCTTCTAATGCCCAATCGGGGAG 51181 37 100.0 39 ..................................... TATTAACAATAACGGTTTCATGTTGGATATTTTTCTCTC 51257 37 100.0 41 ..................................... AGATAGAATTCCGCCCAATTCTTGAACAATCCCAAAAACTC 51335 37 100.0 36 ..................................... AACTTTCGTATATCTCTATTTGGTGTTGTTCCTTCT 51408 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 2 210016-208349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000001.1 Planktothrix agardhii 1813 1813_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 210015 37 100.0 36 ..................................... TTTTAGGATCTCGTTCAACTCCCCAAACAGACTTAA 209942 37 100.0 37 ..................................... CCTTTTTGCATGGCAATCCAGAGCATCTAATCGGAAA 209868 37 100.0 36 ..................................... CGGACGCTGCAATTAAGTTTTTATCGAGTTCAGTGA 209795 37 100.0 38 ..................................... AATGGCTCAAACACCGTCACAATCGGTGATTCAAATAT 209720 37 100.0 35 ..................................... GTTCGTGAGGCCTTACCATAAAAAATATCCTATAT 209648 37 100.0 35 ..................................... CTGCAATATTCCGCCCACCAGAGGGGAGAATGAAG 209576 37 100.0 37 ..................................... CTTAGATCAAGAAACCAAAATGACAACATACTTCTAC 209502 37 100.0 39 ..................................... GGCTATAGCTAACAATTGATCAACAATTGGGATCTCAAG 209426 37 100.0 38 ..................................... TTTGTGGCGATCAGGTTATTTAGAAATTCCTGATTTTT 209351 37 100.0 35 ..................................... ATGAATTTGATGCGCGACGGGTTTCATGACTACAA 209279 37 100.0 37 ..................................... TCTCAACGATTATACAACTGGCTGCAATCCGTTGAAA 209205 37 100.0 37 ..................................... CCACGGGTTCCCCCGTTCAATCTTCGCATTAAACAGA 209131 37 100.0 37 ..................................... GAATTGGTCAGATATTGGATCAATAATCCATCTTGAT 209057 37 100.0 35 ..................................... CATTTGCCTATCCATCGGGTGAGTTTAACGCCTTC 208985 37 100.0 37 ..................................... CCCGCAAAAATAGCACCCGTAATTCCCAAACTAGCTG 208911 37 100.0 40 ..................................... AATTCACCAACAAAGGATAGATACGCATCCGCACTAAAAG 208834 37 100.0 35 ..................................... TAACTCCAATCCCACTGACAGAACTTCCGTAACTT 208762 37 100.0 37 ..................................... TAATGATTAATAATGCTGATTTAAAGGTTTCATTTTT 208688 37 100.0 39 ..................................... TTCGATTTCTTTTTGAGCTTCTAATGCCCAATCGGGGAG 208612 37 100.0 39 ..................................... TATTAACAATAACGGTTTCATGTTGGATATTTTTCTCTC 208536 37 100.0 41 ..................................... AGATAGAATTCCGCCCAATTCTTGAACAATCCCAAAAACTC 208458 37 100.0 36 ..................................... AACTTTCGTATATCTCTATTTGGTGTTGTTCCTTCT 208385 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 484455-483766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000001.1 Planktothrix agardhii 1813 1813_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 484454 37 100.0 34 ..................................... GTTAAATACGAGATTAAAATACCAGACCTCACAG 484383 37 100.0 37 ..................................... CAAAAAGTTCGGGATATTGTTTTACCAAATATTGTTA 484309 37 100.0 36 ..................................... ACTAACTTATGGCAGATACGAAATCGAACCACTGTC 484236 37 100.0 36 ..................................... ATGGCAGCACTCAAGGCAAAATTTGGGGATTGATTA 484163 37 100.0 37 ..................................... AATCAAGAAGCGGGATCTATCACTCCCATTGGGTACA 484089 37 100.0 33 ..................................... TTGCAGTTGGGTGCTTTCAATCGATCCAAGGTG 484019 37 100.0 38 ..................................... CCTTCAAAGATATTTACCCGCCCTCGTTGGTGTCGGAA 483944 37 100.0 33 ..................................... ATAACCCAGTTGGGCGGTATGAGTTACCTCGGA 483874 37 100.0 35 ..................................... AAATTAATATTGCTTTGTCGGTTGTAGGGGGATGT 483802 37 97.3 0 .................A................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Left flank : GGGTGGTAAGGTTTCCAGTGATGATCTCAAATTGTTCTGGGAATCATTATTAAATTGTTGGGAATTTGATCGGAGTTCTGCACGTTCCTCAATGAATTGTCAAGGGTTGTATATTTTTACCCATGATAGCAAATGGGGTAATTATCCATCCCATAAGTTGTTTGATTTGCTGTCAGTTGAAAAAAATACGGATATCCCTCGAAGTATTAACGATTACGAGATTAATCTGGGGGATGTGCCGGACGGTGTAACTTTGAGGGAATCGCGCTAACCTATAGCTGTTTTGGGGCGTTTATGCCAGAACCCTTATTCTGTAAGAGTTCTGGCTGTTTTTGTGAAAATAGGTTGACGAAATTTGTCTAAGCCTTGACTTGAAGGCGGTTCAAGGATTTTTTTTTAATACAAAGTTGACAAAAAATAGAAATATTTGCTATGATCAACCTAGGTTCACGAAATTGCACCTTGAAAATTAAACATCACAGGGGTTTCGGCAGCCTGCT # Right flank : AAAGATAAAATACTAATTACCCTAATTATTAGTATTTTATCTCTCTAATTAGTTTAGCATAAGTTTCCGAAGGGCGATCGCCTAAATGATCCTCAATTTCCCTTTCTGTTCCCCGATTAAAATTAATACTAAATAACCCAAACCTGGGAGTATAAGACCCCCATTCATAATTATCCGTTAATGACCAGTGCATATAACCCAAAATCGGAATATTTTCCTTTAATAATTGTTGAATTTGACGAACATGAGCTTCTAAAAATTGGCTGCGATGTAGTTGGTCAGAGCGATGAGTGGCGATACTATTATCCGGTTTTCGACGTAACGCCATGCCATTTTCAGCAATTAAAATTGGAAGGTTATATTCCTGAGCATAATATTTACAGAAAAAAGATAATCCTTCTGGGAGCGCTCGCCAGTCCCACCATTTACTCGTAATTCCGGTCATTAACCAATTTCTTAACCCTTTAGTTTTAAATTCAAAATCAGAAAAAGACGGTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 1330161-1331202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000001.1 Planktothrix agardhii 1813 1813_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================================================================== ================== 1330161 37 91.9 155 ................TG..............C.... AAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAAGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTCAACAATTGAGCGAT 1330353 37 100.0 36 ..................................... ATAGAATGCAATATTTAGAAAAAAAGTATAGTTTAA 1330426 37 100.0 39 ..................................... GATTGTTGTTTAAACATCACCTCCTTTCTGTTTTAAATT 1330502 37 100.0 36 ..................................... ATCTCGTTTTCTTCAAGAGCGTCTAACCAATCTGAA 1330575 37 100.0 38 ..................................... TGATTAATTATCTTGGTATTGGGAAAATTTGATCTCGC 1330650 37 100.0 36 ..................................... TGACTACTCTAACACCTGTTCCCCCCGGAACTTATA 1330723 37 100.0 37 ..................................... CAACATCTCGACCCATGACTAATTTTAATATCGGGAA 1330797 37 100.0 36 ..................................... TTAGCTTAACCAAATTGATTGATGATTCTAATATAT 1330870 37 100.0 36 ..................................... GATACTCATGCCCCCGGATGGGAATGGGAGATTAAA 1330943 37 100.0 35 ..................................... GGAGTAATTGTTAATTGTGCTCTGGTTATTATAAT 1331015 37 100.0 39 ..................................... GAACTAGAACAAGTTATCTCTGAGTTGATAGATTCCTGG 1331091 37 100.0 38 ..................................... CATAATAGGGAATGTAATATAGTAAGTTATCATCATGG 1331166 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================================================================================================================================== ================== 13 37 99.4 47 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTCTTGTAGGGCTAATTCACAGGCGGCATAACCAATATTTCCACAGGCGGGAGCGTTTAAACCTGCTGCTTGAAAAATTGCGGTGGTCAGGGCGGTGGTTGTGGTTTTTCCGTTAGTTCCAGTAATACAAACCCAGGGCAAATGTCGCAGATTTCGCCAGGCTAATTCTAGTTCTCCGATGGTTTCTATACCTAAATTTCTGGCAGCTTTTAACCCCGGACTATCCCAAGGAACCCCAGGACTCACAACTATTAAATCTAGGGAAATATCGGGTTGAAAATTATGCCCTAACTCGACTTTAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGTAAGAATTGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTCAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATAT # Right flank : GTCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGAAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTGTCAATAACTAACCGGACTCAAAAATATAAACTGTTAATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.96, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 5 2940349-2941866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMN010000001.1 Planktothrix agardhii 1813 1813_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2940349 36 100.0 47 .................................... GTCCTGTAATTCCGAACGCATCTGAAGGGCTTTATTGAGAATATCGA 2940432 36 100.0 43 .................................... TTGTGACGTCTATTTTGCAGTCAACAATATTTTGGCCTTCTTT 2940511 36 100.0 36 .................................... AGATTTAGGAATTCACCAAAGGTTAATCCAGTCATT 2940583 36 100.0 44 .................................... TGGCAGCGTTGTATGTCCAACATTAGTTAAAATATTATTTTCAA 2940663 36 100.0 34 .................................... ATCAGGCTGGCAATTTTTTTCATTTCATTATTTA 2940733 36 100.0 36 .................................... AGGAGCGACGGGGGCAGTGTGTAGGATTTCTAATGG 2940805 36 100.0 40 .................................... AAAACCGCCAATGAAACAGCGATGACTTTTAATGCAAAAT 2940881 36 100.0 43 .................................... GATTGATATAGCGGGTTTTTAGTCCCGAAGGCTTTGGTCACGG 2940960 36 100.0 44 .................................... ATCCAGTGGCAACTGTTGAAGGATTGACTTGATTGCAGCGTCCC 2941040 36 100.0 42 .................................... TTTTGACATCCTGGAAAGTGAGTATTTTAAGAGTTCACCAAG 2941118 36 100.0 40 .................................... TACAAATATCCAGGTTGTTAACACAGTCTCCACTTTTACT 2941194 36 100.0 46 .................................... TCCCATAATTATCAACAACCGATAGATGGATAGCATTTATACGAAA 2941276 36 100.0 41 .................................... ATAGGGTCTGCGCTCCATGCGTTCGGTCTTGTTCGCATTTC 2941353 36 100.0 42 .................................... TGGAAACAGTTAAAACTAGAAGTCATTTTCTTAATTTCCTTT 2941431 36 100.0 50 .................................... ACAATTTAAGATTGTGAGTTTATTGTTTCCTTGAGGATTGACAACATCTT 2941517 36 100.0 42 .................................... CTTGGTAGACAAAGAGATTGTTTTTGCTCCGCCACACAAGAA 2941595 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 2941675 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 2941756 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 2941831 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ================================================== ================== 20 36 99.9 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTAAAGAAACAAGTAAATTTGGCTGAGGATAACCTGAGATTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : CGCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCGGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATTGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTATAGCAGTCGCCACATCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //