Array 1 244658-244449 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLTJ01000042.1 Verticiella sediminum strain DSM 27279 234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 244657 28 100.0 32 ............................ AGGACATCGTCGTGCTCGATCGCCTGCCACAC 244597 28 100.0 32 ............................ TCTACCGGCGGCGCGCCAATCGCATCACGGAT 244537 28 100.0 32 ............................ AGAGAGCGGCCTGTCCCATGAGATATCGTTTT 244477 28 85.7 0 ............GC..A..........G | A [244452] ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : AAATGGCCGCTCCCCGCGTGGACACCAAGAACACCCACGGCACCGGCTGCTCGCTGGCCTCCGCCCTCGCGGCCCTGCTGCCGCAGGCGCCCGACGTGCCCGCCGCCGCGCGTGCCGCCAAGGACTATCTGACACAGGCCCTGAAACATGCCGACCGGCTCCAGGTGGGCAGCGGGCACGGGCCGCTGCAGCATTTCTGGCGGTGGTGGTAGGGGGGCGCTTAGTGATGGCGAGGCGTCGCGTGGTAGCCGTTTCAGGCGTCCGGCGTTTTTCGTCGCTGGCGCCGGGAGCCGGAAGTGGAGACGTTGGCCTGACGTAAATCCCCTGTGCCGGCTATGTGAGTTTGTGCTACATAGCTGAGGCATGGACGACATTGCCGCCTCCGATCTCAAGACAATCCTGCATTCGAAGCGGGCCAATATCTACTACCTGGAGCATTGCCGGGTGCTCGTCAATGGTGCTCAGAAAGATCTGCGCATTGCTCAGCGTGTGTCCGATCT # Right flank : CGCCGAGCCGGACGGGGGCAGCCACCCCTGCGCCGCTCCAGCCAACGCAACACACTACAAGGCCAGCGCCAGCAGCCCGCCTCCTGCCTGGCCGCGTTCAACCAGGCCTCAACTCTCGCCCCATATAACAAGCCCCTTCCCCGTACCCCGCGAGCTTCTTCTGCAGAGGCTGCGTCAACCCCGGTTCGGCGGCGGCATAGCCCAGTTGCTTCCGGAACCCGGCGGCGTCGGCGAGGGCGACCAGGGCGGCGCGCTGCAGGCCGTGCTGCGCGGCCTCTGTGCGGCGGTGGTGCGCCACCGGCCCAGGCCCAGGTCGCGGCCGTCACGGCGCGCCGCCGTGCCGCCACGGATAGGACACGAGGTAGGCGACGACGCTGCCGCCGCGAGAGCCGATCCAACAGTGGGTGGCGGCGAGCTGTAGGCGGTTGCGGTAGAAGGCTGGCTTTCGAGCAGGCTGCCCGGATAGACCTGGGCCTGGATGTCGAGGATGTCCGGGATGT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 67594-67381 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLTJ01000002.1 Verticiella sediminum strain DSM 27279 201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67593 29 100.0 32 ............................. CCGCCATGGACGCGGCGATCGAGGAGGGCACG 67532 29 100.0 33 ............................. AAGGTGCAGGTCGTTCGCGCCCAAAAAGCAGAA 67470 29 100.0 32 ............................. GGGCCGAGCCCGGCGACCCGAGCGAGCGGGAT 67409 29 93.1 0 ............T...............A | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GATCCCGCAGCCGGCCTATCCCGCGCGCACCGCTGCAAAGTGAGGGCACGCGTTGGGGGCTGCGGCTCCAGACGATGAGTTCGTGCCCCTGTTCATGCCAGTGACGGCATAGGGCACGGCCGATCAGGCCGGTTCCACCGGTGAGCAGGATGCGCATGGCCAACTCCTGGAGAGGGTTCGGACGTATCGACAAGTCGGAGATTGTCCATCATAGGCCGGAGTATGGGTTGTCTTCGCTAGGGAATGCTGAATTCCGGCGCGCGTCGTGTCAGGCCGCGACGAAGGGCATTTGATAGCTTGTGTCTATATGCACTCTGAATCGGAATTCGACGGTTGGCTGGAGGACCTGTTTTGCTTCGCTCTGACGCTTTGGACGTTGGGCTGTTGCTGTTTCGGTCGGGGAAATTTCTGCTGGATAATGCCGGAATTGTTGCGGTGCAGCATTCGGTAGAAATTTAAGGTGCGGTTTTTTCTTTTAAAATCAGAAGCTTGTGTTAAGA # Right flank : GGTGGCCGACCTTCCGAGGCACGTCCTGCTGACCTGCCCCACGTAAAACTCCACGGTTAGTGTCGGCGACCACTCGCCAGGCGAGATCCCGTGAGGGCAATAGCAGAAGGCCTTAAACGGCGGTGAAAGCCCGCAGCCGCAGGCCAGGCGCGGGCCGCAGGTGGCCGTCGTGCCCCGTCTCCTCGACGAAGGCGGAACGCGCCAGGAATGCGGCATCGCTCAGTGCTTCGTCCATCGTGGACACCGGGGTGACGCATGCGTCCACGCCGGCGAACTCGCGCGTCCATTCGTCGCGGCTGCGCGTGCGAACGATGGCGGCGACTTCCTCTCGTATGCGGGGCCACGACGCCGGATCTTCGCTGTCGCGTGCAAACTCGGCCGGCAACCCGATGGTGGTGAAGAACGCTTCCCGGAAGACGGGCTCCATGGCGCCGACCGCGATGTGCCGCCCGTCGCGCGTTTCATAGACGCCATACCAGGGTGCGCCGCCGTCCAGAAAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106411-106077 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLTJ01000002.1 Verticiella sediminum strain DSM 27279 201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106410 29 100.0 32 ............................. GACCGGATGGAGGCCGAGGCATCGCAGAACGT 106349 29 96.6 32 .........C................... ACGATCAGAGTTCCCCCGCCCTCGCGCAGTCG 106288 29 96.6 32 ..............C.............. AACATCCCCCGGAACATGGTGGGGCGCGAGAA 106227 29 96.6 32 ...........T................. CTGAAATTAGGGACGGTTCTCGGCCGGATATG 106166 29 89.7 32 .............C.....C...C..... CCAGCGTTCGTCACGATCAGTGATTCGACGCT 106105 29 69.0 0 ....GT..G...T......T.CC.TG... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 91.4 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GGCGGCGTGCCGTCGAGTTTGCGTAGCCGGCCGATGCTTCTGGCTCCTCTGTAGCGTGAAGGAGCTTGTTGCCGACGACGGCTCTTCCTGTTCATGCCGGTGTTGGCACAGGGCGCAGCCAACCAGATAGGCACCGCCAGTGAGCGGAATATGCATGGACAGTCCTCAGTTGACGGACGGGTGACGCGCCCCGGGCAAGGCTGCACCCATCGCGGGCTGAAAAGTATCGACTCCCTCGACGTTGTGTTGATGTTCGTGCGCTTGTGGCTCTACGTGGCGAGACATGTTCTAGTCATGTATACGCGGGCAGATTTTCGATGCCGTAGTGGACGCAGAGGGGATGGCCTTTGCAGGGCCAGGATATGGACGGCGATCCAGCCGATGCATGTCGCCCGGTGGTACGCTTTTTCTTCGCCTCGGTGCTGGATTGCTGCAGTGCAGCAATCGGTGGAAATTTAGGGGTCGATTTTTTCTTTTAAAATCAAACTGTTGCATTAAGA # Right flank : AGTTCCTTGCCGGAGCGCCAGCTACCTGGCGCCACGGTCGCCAGCCGTGATGGGATAGCGGCGGTGCGCGGCTCTGCGCATGCGCAGGCGTGCCATCAGCGCATCGCGAAACGGCGAGGGCCGTCGTCGACGAATTTCACGTTCGGTCACGCGGTCAAGTACCACAACGCGCCAGAGGACACACCTATCTTGAACAGGCCGTGCCCGTCCTAGCCGCAGAAGGCCGGCTCGATGTGTCCCCGCGCGGTGCGCGGGGCGGCTGATCCCCTCCGGCGCATGCCGTCAATCGGCCTTGACGCCGGCCTCTTTCACCACTTGCGGCCAGCGCGCTACGTCCTGCGCCACCAGTGCGCGGAAATCGGCCGGGCCGCGGTAGACCACCGCGTTGCCGCCGGCGGTCAGGCGCTCGCGCACGCTCGGGTCTTGCAGCGCTTTTTCGATCTCGGCGCTCAGTTTGGCCACGATGGCGTGGGGCGTGCCGGCCGGTACGAAGAAGCCGC # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 117417-116226 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLTJ01000002.1 Verticiella sediminum strain DSM 27279 201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117416 29 100.0 32 ............................. TCCTTTTGCGCAAGTCCGGTCACCCGACCAAA 117355 29 100.0 32 ............................. TAGCCATGAGCATGTGCGAGCGCTTGCAGGAT 117294 29 100.0 32 ............................. TTTGTCGATCAGGCTGTCATCCTCGATCACCC 117233 29 100.0 32 ............................. CGCGATGTCGGCCTGTTGTTCAGCCAGACGCT 117172 29 100.0 32 ............................. GGCGGCGAGCTGGCAAAGCTGGCCGGCGTGTT 117111 29 100.0 33 ............................. GGCGGCGAGCTGGCAAAGCTGGCCGGCGTGTTC 117049 29 100.0 32 ............................. ATCGACATCGACGCTCTTTCGAACGAGCTTCG 116988 29 100.0 32 ............................. CACTTACGATGTTTCAGGGCGGACTAGTTTCT 116927 29 100.0 32 ............................. TCCGCTCAGATCGGCATGGCCGTTGTGCTGGT 116866 29 100.0 32 ............................. GATGTCAGGGTAGGCGGCGTTGTAAGACCGCG 116805 29 96.6 32 .......A..................... TCCGCCAGAAGGCCTACCTTCTCGAGCGCGCC 116744 29 96.6 32 .................C........... TCGATGGTGTCGACTACAGGGCGAATAGAGTG 116683 29 100.0 32 ............................. CACTTCGTCGAGCCAATGCCGTGCGACCATCT 116622 29 100.0 32 ............................. CCGCGAAAGTGCTTGAAGAGTCGCCGTGAGCG 116561 29 96.6 33 ...........A................. GACTGTGTGCGGCCTCCGGTCTGGCGGGACGCG 116499 29 100.0 32 ............................. TTCGTGTCCCCGGGCCTGCGCGGCGTACCCGA 116438 29 100.0 32 ............................. ATCAGGAAGTACTCGGGCATGCCGGCGCCCAT 116377 29 96.6 32 .......................A..... AGCTTGGCGCGCGCCGGGCCGTAGCAGTCGTG 116316 28 86.2 33 A.........T-.T............... TGGTGTGGCAGTTGGCCGACGCGAGCGCAGCAT T [116302] 116254 29 69.0 0 ........T...TATT..CA.......TA | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.1 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : GTGAAGTCGGAACGCCATCGCTTCACTGATGTCGCCGCGCGCGGACCGAACTACATGTCGGCCATCTCGCTAGTGAACCTCGCCAGCGTGCGCGCACTGGAACAGGCCAGCGGCCAGCGCATCGCCCCCCTGCGCTTTCGGGCCAACGTCTATTTCGATAGCGACACCCCATGGATCGAAAACGACTGGATCGATCGCGACCTCGCCATCGGCGACCAGGTGCGGGCGCGGGTGCTGCGCCGAACCGTGCGTTGCCCGGCAACCGAAGTGGACCCTGCCACCGCCGAGCGCGACATGGACGTGCCGGGGCTGATCCACCGGCATTTCGGGCATCGGGACATGGGGGTGTATGTGGAGTTGACGGAGGGCGGGGTGGTGCGGGCGGGGGATGGAGTGGGGGTGGTTTGAGCGCCGGTTGGTGAGCGGGTTGTTGCGACGCAGCATTTGGTAGAATTTTGGGTGTTGGTTTTGTCTTTAAAAATCAAGTGGTTGCGTTAAGT # Right flank : CCGATTCAGAAATTTGTTCAGGCACCTTCGGTATGCTGTCCCGCTTATGAGCCTTTGCGTTCAGGCATTCTCTTGTCAGCCCCGAATGTACGAAGACGCCGTGCGCAGTCGCTGGTCAGCCCGAGACTTCACCACATAAGCCCATACACGTTGTCATACGTGAGCCGGACTTCGTCGCCGTCCGTGCGGGCGGCAATGCTCTCCCATGCACCATTGCCTCGGGGCAGCACCGGCATGACCAGCGCGGGCTCTTCCAGCACGCGATAGCGATCGCGCAGTGCCTGAATCTGCGTCTCATAGCGTACTTTCAGTGCCGGCCCCAGATCGGCGATCTGTCGCGCATCCACCCGGACGGCGGATTGATCCCACGCATGCGTGCCGTCCTGACGCCATGATTGAAGCGTGCCGTTGCACTCGACCGCGAGGAACACGGTTCGCGTTTCGTCCCCGAGCCGCGTGGGAACGACGCCGTTACCGTCCCAGAGCATGCTGTTGCTGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //