Array 1 441011-441278 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADOBJ010000001.1 Rahnella laticis strain SAP-29 contig1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    441011	    28	  89.3	    32	..T........CG...............	GACAGTATGCAACAGGGCCTTGGCTTAATGTC	
    441071	    28	  96.4	    32	..T.........................	TCACTTCGCTAAAGCTTCCGACGTTCGTGATG	
    441131	    28	 100.0	    32	............................	ACTGTAGCCGGCGGTTTTGGTGTTGCTTTCCA	
    441191	    28	  96.4	    32	.............A..............	TAATACCATTCCGCATAAACCTAATCGCACGT	
    441251	    28	  71.4	     0	...........T.......T..CTCCTC	|                               	
==========	======	======	======	============================	================================	==================
         5	    28	  90.7	    32	GTGCGCTGCCGGACAGGCAGCTTAGAAA	                                	       

# Left flank :   CACTGCTGACGCTGCATGATAAGAGAATAAAAGAAATTTTAGCGTTTGTGCTGTGTGAACGTTTCGAAATGCTCCGCTGTTCGCTCTATGCTTCGAGCGAGGTGTTCCAATGAAAAAGGACTGGCATTCAGCAGACATCATTGCCGCTATCAAAAAGAAAGGCACAACCATGGCAGCGGTATCGCGGGAAGCGGGATTGAGTTCTTCAACGCTGTCGAATGCGTTAACGCGAAAATGGCCGAAAGGTGAAAAACTGATCGCCGAAGCCATCGGCGTACGGGCAGAAATCATCTGGCCGAGCCGCTACAGCGAAACGAAATACCTGTGAAATTGGGTTCATACGCAGCTGAATATCCAAAAGGGGCCCCGACCCCTTTATTTTCGGGTTCCGCTAACTTATTGATTTTACGTTGTGTCTTATCAGTGGCCAGGAAAAGGGTTTTAAACAGAATCAGGCGCTAAATCATTATTCCATCTGGAAATATCGTTACTATGCAACA
# Right flank :  CTTCAACCCACCAAATCCCTCCCGCTAAATTCTTTCCGCCAGCGTGTCGGTGTGGTGTTAAGCCGTTGCCGGAAGTGGTGACGCAGCGTTTCGGGGGAACCGAAACCGGCTTGTTCTGCGACGCGGTCAACGCTCATCTTCCCGCTTTCAAGCAACGCGCAGGCTTTTTCCAGCCGGACTGTCAGCATCCATTCGCCCGGGGTGGTGCCAGTCGCGTCGTGAAAACGACGCAAAAACGTCCGGCGGCTCATTCCGACCTGAACGGCAAGTTGTTCAATTACCATCGGCGTATTGAGATGGCTGCGTAAATCATCCAGCAGCGGCGCGAGCGTTTTGGTCTGCCGCAGCGGCACCGGTTGCTGGATAAGCTGCGCCTGATTTCCCTCGCGCATTGGTGGCGTCACCATCCGGCGGGCGGTGCGGTTGGCGACTTCTATCCCGTAATCTCGACGGATGAGATGCAGGCATAAATCGACACCGGCCGCGCCGCCCGCAGAGGT

# Questionable array : NO	 Score: 3.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCGCTGCCGGACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0.41   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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