Array 1 109767-108760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOW010000003.1 Escherichia coli strain BSD2780061687b_171204_C10 NODE_3_length_354516_cov_17.0264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109766 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 109705 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 109644 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 109583 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 109522 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 109461 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 109400 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 109339 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 109278 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 109217 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 109155 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 109094 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 109033 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 108971 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 108910 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 108849 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 108788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGTGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136410-135466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOW010000003.1 Escherichia coli strain BSD2780061687b_171204_C10 NODE_3_length_354516_cov_17.0264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136409 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 136348 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 136287 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 136226 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 136165 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 136104 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 136043 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 135982 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 135921 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 135860 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 135799 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 135738 29 96.6 32 .........T................... CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 135677 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 135616 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 135555 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 135494 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //