Array 1 16730-15113 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHX01000052.1 Natronorubrum sulfidifaciens JCM 14089 contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 16729 30 76.7 35 AAACT.....G.T................. TTCATGCAATCACTTTGTGGCCCGATCGGGGCGTG G,A [16715,16721] 16662 30 100.0 37 .............................. GCCCAGTCGCCCCGTCTTGCATATTAGCGGCGCGCAT 16595 30 100.0 37 .............................. ATCAGTGAGAGTGCCGACGACTTCGAGATCTGCTCCT 16528 30 100.0 36 .............................. GTAGGGGTATTTTGCCTTCTCTTGATCAATGCGCTG 16462 30 100.0 36 .............................. TAGTAACAGCGTTCGAAACTCGCTAAGCGGCAGCGG 16396 30 100.0 37 .............................. CGATCGGCACACCGACCACAGACACGCCGCGTGACGT 16329 30 100.0 35 .............................. CTCGAGGCGCTGTCTCCCAGTGGACGAGTCCCCCA 16264 30 100.0 35 .............................. GACTTGGCGATGCTGGTGTCTATCTCACTGGCGGT 16199 30 100.0 35 .............................. ATGGAAAAACGGCTGGCGGATGCGTTCGAACGGTG 16134 30 100.0 35 .............................. GATCATCGGAGGATCACCCAGACGAAACCGAACGT 16069 30 100.0 35 .............................. CGTCGTCGAACTCGAGCGCGTCAAACGCGACCTCG 16004 30 100.0 36 .............................. TCTCCTCATCGAACCGTCTGCGGGGCGGTAAGGGGT 15938 30 100.0 38 .............................. GAAGGAAGATTCGCACTGTCCACACTCTAGCGTAACTC 15870 30 100.0 36 .............................. GGTGGGGGGCTTCGAGAGGAATACATGGAATGGAGG 15804 30 100.0 35 .............................. AGTTGTCGAACATCCGGCGGGAAAACACGGAGAGA 15739 30 100.0 35 .............................. GTTCATACGTCAGCCACCCCGAAGAAGTGGACAAC 15674 30 100.0 34 .............................. CTGTAGCACCTCGCTCACGGCATCTGGTAGGCGT 15610 30 100.0 35 .............................. TACGGTGCGCCGGCCGAAGACTCGTTTGCGATCCA 15545 30 100.0 35 .............................. CCACGAAGTCATCGCACCCAGCAAATCTTGCACTT 15480 30 100.0 36 .............................. ACTCTCGGTGATTCGACGTCCGACTACGGCAAGCCG 15414 30 100.0 43 .............................. GATTTGACTAAGACGTGGTTCATTGCTCCACCTCAGTCCATAG 15341 30 100.0 38 .............................. TGTCACTCGGCGTCGGACTGTCGTCGAGCGCGGAGGCA 15273 30 100.0 37 .............................. GATGCCGAGTGATGACCGAACCAATCGATGTCCAGTG 15206 30 100.0 34 .............................. CTTGTGCTCACAATCGAAGTCGTCAACACGCTGG 15142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 25 30 99.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CACTCTCCACCGGATTCTCACATTCCTAGTAACTGACTATTCTAGCTCGACGTCTCTGGATACCCCGATCTGC # Right flank : ATGGACCTCGAAGGCACGTCCGTCGAGATCAAGAGTGTTCGTCGATCCACCGACACCAGTTGTAAAAGTCGTCCGCCCCGCACTGGTCGGCGATCGATCGAAGTGTTCCGATCGCGACCTCGTCGTGTTGGGGAACGTCGACGTTCCGAACCTCGCCCGTCTCCGGGTGTTCGTATCGAAGGCGGACGTGACTTCCGTGTCGAGAAACGGGTTGGTAGCCGAACGATGTGAGGACTTTCACGACCTCGCGGCCGGAGAACGTGGTTCGGACCATTCGTCACCGCATGAAGTCGGGATAATCCTCGTGATGGACGTCCTCGAGATCGTCAGGCTCGATGTCGAGTTCCTCGCGGAGGAATTCGTCGGGGTCGTCGATCGACTCTCCGCCGTCCTCGTGCAACTCGAGGACCTCAGCCAGTTGCGCGAGTGCCTCGGCACGTGTGTCGCCACCACGTGCGAGACCAGTTTCGAGGTCCTTCGCAGTGACAGTCCCGTCACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2034-83 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHX01000053.1 Natronorubrum sulfidifaciens JCM 14089 contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2033 30 100.0 36 .............................. AGCCACATCAGACGTAGGATGATCTCTCATCAACAC 1967 30 100.0 35 .............................. ACGCTCTCGAGCGAGGACAAGCAGGAGCTCGAGGA 1902 30 100.0 34 .............................. GTACAATCATACGCTTCCCCGTCGGCACGATCGC 1838 30 100.0 35 .............................. GCCTCGTTGTCTCCACCAGCACCCGTGTCGGCACG 1773 30 100.0 35 .............................. TGGTCGTAGAACCCGGCAGCGTAGAGATCCATCCA 1708 30 100.0 37 .............................. TCTCGATGAACTGGGCAGGCCCACCAGTGGCCACCGA 1641 30 100.0 39 .............................. TGCTAACGTCTGCTCATGAACGTAGTTCGGATTCGTCCA 1572 30 100.0 37 .............................. AGAGTCCTCTGCCTCCTCTGTCTCGTCCGGCACGCTC 1505 30 100.0 36 .............................. AAGGAAATGAGCAGTTAGCAAGCTCAGTCCGTTTTT 1439 30 100.0 37 .............................. ACCGCAAGGACGTGCCTGTAGATGACCGTGGCCGCGT 1372 30 100.0 36 .............................. TGGCATAGACGATGGGTCTAAGTCCCACCAAATCGA 1306 30 100.0 38 .............................. AGCAGGGGCAACAGTGCCTTCGTCACCAGTTCCGCCGT 1238 30 100.0 34 .............................. CGACTAGTGCCAACCCACACACTCCAGAGGACTA 1174 30 100.0 37 .............................. TCGAATTTATGGCGACCGAAGGCGGGCGTGTAACGCC 1107 30 100.0 37 .............................. TCTGTGAGGATCGCTTGCTTTGTTGGGACTGGGACTC 1040 30 100.0 38 .............................. CCACGCTTCCCGCGCCTCATGGAGTGCGACCGGGTACG 972 30 100.0 36 .............................. GTCCCACACCGCCGAGTCGTCGGTCGGAACCTCCCA 906 30 100.0 37 .............................. GAGGTCGTCGGGTGTGAGTGGGTCAGGAGCCGAGAGT 839 30 100.0 35 .............................. CGGATACTGTGACAGTCCGAACACAGCGTGACGTG 774 30 100.0 38 .............................. GATCGGTTGTGTCGGTCGGCTTCGGCCTCGAGCCAGTC 706 30 100.0 37 .............................. GTCGGCACGTCGCCGTTCTCATCCTCGAACTCCTCGA 639 30 100.0 35 .............................. GACGAAGAAGGTATCGTTCGGATTGTCGACGGCCG 574 30 100.0 35 .............................. CGTCGTAAACCGTTTCTCGGCGTCGTCGACGAACC 509 30 100.0 37 .............................. CCGTCGGTGACGCGCCAGTTGGAGTGGCGCTTCGGGT 442 30 100.0 36 .............................. CTCTGGGGTCCGGGGAAGAACCGGGGGAATATCCAG 376 30 100.0 36 .............................. TGCTTCGGGACATCGCCGGCGACGAGCCCCGATTGG 310 30 100.0 37 .............................. CGTTCGGCGAAGTCCTCCTCGGACTGGTCTATATCCG 243 30 100.0 36 .............................. ACCGAGACTGTAGCCGAGTTCGCGGTTGATGATCGA 177 30 100.0 35 .............................. TTCATGCAATCACTTTGTGGCCCGATCGGGGCGTG 112 30 80.0 0 .......................CATCC.T | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.3 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGGACTATCGAGCACCCACAATTGAATCGGAAGGTTAGTTACCAGTACCTGATGCGGCTCGAGGCGTACAAGCTCAAGAAACACCTTTTGACCGGAGAGGACTACGAACCGTTCAAGCGGTGGTGGTGACATGTACGTCATCATGGTCTACGACCTCCAGGCTGATCGCACGCACAAGGCACTCAAAATAGGTCGACGATATCTAACCCACGTTCAGAATTCCGTCCTCGAAGGAGAAATATCAGAAGGAGACCTTCAAGAACTTCGCGGAGAAATCGAAGAGTTACTCAAACCCGGTGAATCGACGATTATCTACGAACTCTCGTCAGATTCGCTTCTTAACCGGACCGTGTATGGTGAGGATCCGACAGAAGACCAACGATTCCTATAATAGAGCAAGATATCGTCGACCCCCCAGGGTTTACCGACTATTGGCGGTCGACGGAAGTTCTTTGTGCAGACCGGTCCATATGGGGACTGTAGCCCGGATATCAGGCATG # Right flank : TTCTAGCTTAGCGACTGACTGAGACGGTGATCACGCCGAAATTGCGTCGGATCTGACCGCTATCATACCGAGATAGCTGCTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 15534-11548 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHX01000053.1 Natronorubrum sulfidifaciens JCM 14089 contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 15533 30 100.0 35 .............................. ATCAATTGCGTCGACCACATCGCGGAACAACCCTC 15468 30 100.0 36 .............................. ATAGACTAACCCCTCCTGCGCAGATGCCGACTGCGA 15402 30 100.0 37 .............................. TTGGTATTTGTCTTCACGCTTTACAGAGTCTCCGGTG 15335 30 100.0 38 .............................. ATTTTCCCCAGGTCGTTATCATCGTTGACGCGGAAGTA 15267 30 100.0 36 .............................. GACGGATCTCGCATCATCATAGCGATTTGTCCGGGC 15201 30 100.0 36 .............................. GTGAATACTCTCCATATGACGCAGACGAAACGATTG 15135 30 100.0 37 .............................. ATCTCGGCAGGCTCCCAGATTGCGAGGTAGCCACTCG 15068 30 100.0 35 .............................. GCTTCTAACACATCAGCCATAATCCTACGGGCCTC 15003 30 100.0 37 .............................. GTCAAGAAGCATCGGATCAGACTCAAAGACCTACCCA 14936 30 100.0 35 .............................. CTGACCTTCGTCTTCGCGACCAACGAGATCAGCTC 14871 30 100.0 36 .............................. TATATTTTATCGCGACCACACCACTGACGAACAGTG 14805 30 100.0 35 .............................. TTTGACTTGCCGCCGTGGAAGTCACACTTTCCGTG 14740 30 100.0 36 .............................. ACTCGAGACCATCGACAGCTTCTCGTCGTGTTCGTC 14674 30 100.0 35 .............................. GGCGTGAAATAAAGTGTGTCTGATTCTCGAGAAGA 14609 30 100.0 34 .............................. GGTCATCGCGACCACCGTTCGCGTTGCGCCTCGA 14545 30 100.0 35 .............................. GATGCCACGATCTGCAACAACCGAGTCTACGAGTC 14480 30 100.0 37 .............................. GATCTGGGCGACTGCAGCCACATCGGCGAGGAGAACG 14413 30 100.0 36 .............................. CGGGCGTAAGCTGGGGTAATCGGCCCCATTTCGAGG 14347 30 100.0 33 .............................. GAGATGCCCGTAACTCCTGGCGACCTCGAGCGC 14284 30 100.0 36 .............................. GGCGAACGCGGCGGTGGTGGCGGTGGGGGTCGAGGC 14218 30 100.0 37 .............................. TCCTTGTGTATCAATCTCGCCGCAGACTCCTTTGATG 14151 30 100.0 37 .............................. TGCGTGTTGCTCTTTGACCGGATTTGATGCAGTCCCA 14084 30 100.0 33 .............................. CTGACAGTAGGGTCGTGTTTCCCCACTGTCTTT 14021 30 100.0 37 .............................. CGCAACTCGGGAAGATCGGGAAGCAGCTGCGCTCGAG 13954 30 100.0 36 .............................. AGGTCAAAAACGAGTGCCGAACGACGTTATGTAGTT 13888 30 100.0 35 .............................. CTCGAGGACGGCGACCGCGAGTCCGATCGCTACCA 13823 30 100.0 37 .............................. CACCACAACGCTTGCACTCGACTCGGGCCATGTCACC 13756 30 100.0 37 .............................. CCGCTATCAACCCGATCGATCAGGCCGTACCGTGCCA 13689 30 100.0 35 .............................. CGAGTGGTTCGGCGTCGTCGAACTCATCGATGATC 13624 30 100.0 36 .............................. CACAATAATGCCGGTAATGTACGGTCTAGTGTGAAA 13558 30 100.0 36 .............................. CAATCCCTCCTCGTGGGAATTGAAATAGTCTCCACA 13492 30 100.0 35 .............................. GACGACACGGTCAAAGCGCTGGACGCGGAGACGGG 13427 30 100.0 35 .............................. CCTCGGTAGTCATGTCGGATGAGCATGCCCTGGGC 13362 30 100.0 37 .............................. CCGCAGTCGTGGTACGCGTTCTCTGCGTGTCCATCCG 13295 30 100.0 36 .............................. GCCCTATACTGAGTATCACCATTACTGGGCGATAAG 13229 30 100.0 36 .............................. TCGCACCAGCAGTTCCCGATGATGAGATCGGCCAAG 13163 30 100.0 36 .............................. TGGATGCAAGAGCCGATGATCCAGAGTGGGTTGGTG 13097 30 100.0 36 .............................. CACAGGCCGGACGCGACCGCGAGCACTCCCACGCTA 13031 30 100.0 32 .............................. GGATTTGAAACATGATACCATCGGCAACTATA 12969 30 100.0 37 .............................. CTCGGACCTTCCAGTCGCGGTTCTCGACGAGTGGCCA 12902 30 100.0 35 .............................. GATGACATAGATAGTCTCTATCCAAGTCGCGTATA 12837 30 100.0 35 .............................. ATACGTGAATCCGTCAACCTCGTCACTGCATACCA 12772 30 100.0 35 .............................. ACTATGTCGTCGACGGGGGCAGAACTTATCGGTTG 12707 30 100.0 35 .............................. CCGCCTTGCGCGAGACACCAGCCAAGCCCTTCGGA 12642 30 100.0 36 .............................. GACAGTTGTTCGTTCAAGGATGCGAGAGACACTGTG 12576 30 100.0 34 .............................. ACATCGGTGACGGCCGGTTCTTAGCGGAGACCTT 12512 30 100.0 35 .............................. AGTAATGGGAATCTCCGAGAAGAGTTGCTTGCAGC 12447 30 100.0 36 .............................. ACATCCCACCCGTGTTTTCTATCGGCTGCGATCAGT 12381 30 100.0 44 .............................. TCCAATAACACGTTCTATGGCTATTCTGGCACGTCTGGAACCGA 12307 30 100.0 37 .............................. AATGGCGCCGTCGTCCGGCTTGGCTCAGCCGACGTCT 12240 30 100.0 35 .............................. CCGATCGGCGTGCCAAGCACTGTGAGTACGCGCCC 12175 30 100.0 37 .............................. ACACCGTCGATATGCCGCCGGGCGGTGCTCTGCGCGA 12108 30 100.0 35 .............................. AACCCTGAAGATGAGCCATCGTTCGTCGCCAGCCA 12043 30 100.0 37 .............................. CTGAAAAAGAATATCGTGAATTGTTGCTTCGAGAAGC 11976 30 100.0 36 .............................. TCGCTCGAGGCTAACCCCGGCGGTGCAATCGAGAAA 11910 30 100.0 38 .............................. CTCTATGTCTTCGCGTTCGTCGTTGACTGCTTGCCCGA 11842 30 100.0 37 .............................. TCGAGATCGGCGACTACTACGCCCAGACCGACCGCAA 11775 30 100.0 37 .............................. GGCTTTCGCGATGCGACGGGACTCGTAATCGCGCGCG 11708 30 100.0 36 .............................. CTGCCGCTGGCGATGAGTTACCTGTTCATGGCAGTT 11642 30 100.0 35 .............................. TTGCCACAGTTCGAGCAGCGGCAGACTGAGGACGG 11577 30 76.7 0 .............T.C...A.A....CGT. | ========== ====== ====== ====== ============================== ============================================ ================== 61 30 99.6 36 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GCTCTCGAAGAGCCGGCTAGCGGTGAAAAAGAGGCGGCAACGAAAGAACGGCCTCGAGTACACCGAGCGCCGTGTTCTGCTGATGGACGACGCCGATACTCCTGGTGAGAGCCTCGATCCGGAGACACCTGACGTCCACACTCGAGGGTGTCCCTCGAGCACTCACAACCCCTGAGAGGGGTTCCACTCTGTACACCTGACTAACATCCAGCACAAGAGCGGTTGTATGCAGTGTACCGCTACTAGGTAGTACGTCGCTCGATCGGTCGTCGTCGGTCTTCCTCGAGTGACTCGCCTATGGATGTGTCTGAAGACGTCATCTGTCCCCGGAAACAACGTGACGAAAAGCAAATCCAGAGGATGCCCCGAGAAGCAAGTGATCGAGTGTCGCAGTTCATTGTTTCCGTCGACCCCCAGAGGTTTGTCGGCTATCGCAGGTCGACGGAAACCGATTTGTGTGAGTGGCAAGTAACGGTTCCTATGGCCGGGTTTCCGGCATG # Right flank : ATCACATCTCAGCACCTATGTTGCCGATTAATCATACAACCACTAAAACATCCACATCGAGAAACACTTTTGTAACGACAATTCTTCTGATAAGCATGACGATGAGTAATACCAATGGAGGTAACCGCTGACAGTGCGGATTATGGTCAACTTATCCGCTCGAGCGGACGCTGCTTACGATAACGCGTATCACCACAAGTTACGCGGTCGAATTTGGCGTGCACTCGAGGGAACTAAATACGACGACTTGCACGACTCTGGGGAACCACCAGGCTTTGTCATGTCGAACCCGTTCCCACCAGGAGATATGCGCGAAGGTGACGAGCGAACATTGCTTGTGGCGTCACACGATGAAGAACTTCTCGCGCACGTAGCTGCTGACTTTTTCGACTCCCGGGAATTGAATATCGGTGAGATGCCGTTTCGTGTCGAGGATGTCCGCGCACTTGAGCCAGATGTCGGGGAGCCAGGGACACGAGGCACACTCGAGACCGGCACTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //