Array 1 1332-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKB01000002.1 Listeria monocytogenes strain FSL L7-0230 NODE_2_length_532218_cov_114.717090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1331 36 100.0 30 .................................... GGACACAGATAGTTTTATGGTAAGCTATAT 1265 36 100.0 30 .................................... GGATTGTACGAAGTTGGGTTTAACTCCTCA 1199 36 100.0 30 .................................... TAGCCGCTACTCCATCATCCCTGACCAACA 1133 36 100.0 30 .................................... GCAGAAAGAGTGCAGAAAGGTGCCACAGCA 1067 36 100.0 30 .................................... ATCAAAAGAGTTCTTGGCATATATCGGATA 1001 36 100.0 30 .................................... TGATGAAAGTAAGACAATATTATGAATCAG 935 36 100.0 30 .................................... AAAATCCACACAAAGGCGTCCTGCATAGGT 869 36 100.0 30 .................................... ATACTTGTGAGCCTTCGTCCTCTAACTGGT 803 36 100.0 30 .................................... ACATGTCCGTAACACCACTTGTCACCCCAG 737 36 100.0 30 .................................... GGAAAGACGTAAGTGTCACGCTAGTTGCGT 671 36 100.0 30 .................................... CATTATCATTGATAAATGATTGTGCTTTGC 605 36 100.0 30 .................................... CGAGGTAGAAAAAATAGCTTTATTAGCCGT 539 36 100.0 30 .................................... CCAAATTCAAGTCTTTCTTCGAATTCCTTT 473 36 100.0 30 .................................... TCTGAGATAACTGCGTAAGACCATGATTCC 407 36 100.0 30 .................................... TGAGGTGCAGTCTGGTTATATCCATTTCCG 341 36 100.0 30 .................................... TACACATCAAGTGAATGTGTTGGGAATGCA 275 36 100.0 30 .................................... TGTCGAAACTTTTCACGCTGGATACGACAT 209 36 100.0 30 .................................... TACGTCCAAAATAGCCACTCCTTACGTATC 143 36 100.0 30 .................................... ACTTTTAGTTGTAGAAGGCACTAAAGTAAA 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTCTGAGATAACTGCGTAAGACCATGATTCCGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 406226-404320 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKB01000001.1 Listeria monocytogenes strain FSL L7-0230 NODE_1_length_598122_cov_88.918117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 406225 29 100.0 37 ............................. TATTAAGGATTTAGAACATCATCCTGAACTTGCGCTT 406159 29 100.0 35 ............................. CAGGAAAAAACTCAACAGTGAACATTGATAACAAC 406095 29 100.0 34 ............................. GCAATACAAGAAAAAAATCGAATCAACACTTCAT 406032 29 100.0 37 ............................. GAGGTAGATCAATATCGTTTCGCGGAAATGGTGAAAA 405966 29 100.0 36 ............................. AATGTTGAAAGTTTCTTCATTATCCGCAATATTATT 405901 29 100.0 36 ............................. TTCACTTTCCCAACCATCAAATCACTTCTTTTAGCT 405836 29 100.0 37 ............................. ATGACAAGTTGGATTACTAATATTCAAGCTTATCAAG 405770 29 100.0 37 ............................. ATAACCGAATATAGTAGTAATCGTTTTCGAATGGGAT 405704 29 100.0 34 ............................. AATGATGACTTGGCTTATTGAAGGGATTATTCAA 405641 29 100.0 36 ............................. ACGCTCCTGTGAGCATGCAAACTTAAACTAATAAAT 405576 29 100.0 34 ............................. CTTGTAGTTGATGATCTTTGGGACGATGGTTTTA 405513 29 100.0 34 ............................. AATGACCCGAGAAGCAAATTAAACACTTGCGCGG 405450 29 100.0 35 ............................. TATATTGTCTAATTTGTTCAGCTTGCAAATTATAT 405386 29 100.0 37 ............................. ACTGATAGCACTACATTTGATACGATGATGAAAGTAA 405320 29 100.0 34 ............................. TTTGGTGCAATAAACATCTTACGAGCTTCTGGCG 405257 29 100.0 34 ............................. GTCGCAAACACCACTCCTGCACCATCCTGTATTT 405194 29 100.0 36 ............................. ACTGTTTAGAATTCAACCAGGTTCCCGGAGAATTAG 405129 29 100.0 37 ............................. CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA 405063 29 100.0 34 ............................. CTCACTGGGAAAATCGCTAAATATTTGTATCCTG 405000 29 100.0 35 ............................. ATGTGAATAAGTTTGTTTTAATTTTTTGCTTTTTA 404936 29 100.0 36 ............................. TAATGTGGCAGTTGATATATTAGCAACCACCACAAA 404871 29 100.0 35 ............................. ATACTTAGACCTGCCGCCGATGCAAATACCGCAAA 404807 29 100.0 39 ............................. TTTATTTTCCGAACACCTTGTTCTTCCAAAATGGCTGGA 404739 29 100.0 34 ............................. GATGGAAGTATTAGTGTGAGTGTTCTGGCATACG 404676 29 100.0 36 ............................. GCATATCAAGCAGATGATGTAAAACGTTTACGAGCA 404611 29 100.0 37 ............................. AACCATCTGATGGATCAATGGGGAATGGAGTTTTTAC 404545 29 100.0 36 ............................. TTGTAGTCTGCTAGGTCATCAAACGAATCAATACCA 404480 29 100.0 37 ............................. TTGCAATAAGCATAGGAACATCATTAACGCCGGTGTT 404414 29 100.0 36 ............................. TCATTAAAGAAGAAACACAAAAAGAAGTCGTATCTG 404349 29 93.1 0 .......................C....C | A [404324] ========== ====== ====== ====== ============================= ======================================= ================== 30 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCCCCGCCAAACAGCGCTGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGTGTCTGCACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAATATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 422557-421296 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKB01000001.1 Listeria monocytogenes strain FSL L7-0230 NODE_1_length_598122_cov_88.918117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 422556 29 100.0 36 ............................. AGCTATGATGGAAGAAAATGGCGACATTCAAAAACC 422491 29 100.0 36 ............................. TCTTTTTTTGCTTCTTTACGCTGACATTCAACCGAA 422426 29 100.0 36 ............................. CGATTATAAACGTCTTCCATTCTATCCTTTACAAAC 422361 29 100.0 35 ............................. AAATATCCTGTTATCGTTGGAGATATTGAGGAATC 422297 29 100.0 35 ............................. TCAGCTAACCAATCTGTACAAGAAGCCTTTGTTTG 422233 29 100.0 35 ............................. GAATCTCTCCAAGTAAAACCAGGTATGCCAGCTTT 422169 29 100.0 34 ............................. ACTCTTTTTCAAGGACTTTGTACTTATTCGTCTC 422106 29 100.0 34 ............................. AAATCAACGGGTAAATATTTACTCACAGAGCTTC 422043 29 100.0 35 ............................. TTAACAGAAGAAATGTTTAATTGTGTCCCGTCAGC 421979 29 100.0 35 ............................. GTTGAACTAGAAAAACTGCTTGCTTGGGTAGATGA 421915 29 100.0 38 ............................. CAAGGTGTTCCTTTTATATTTAAGTCACCTTCATTGAC 421848 29 100.0 36 ............................. TAATGTTTCTCGTGCTGCAAGAGAGTCTGGATATAC 421783 29 100.0 37 ............................. CATTTCAATAGCTTCCTTTGATGTAACATTAAGCTCA 421717 29 100.0 36 ............................. TTATCCATGCCATCGTAGCCCCAAGCATTACTTCCA 421652 29 100.0 37 ............................. AGCGGTGTAGACAAAATAACTACAATTAAATTTTCCG 421586 29 100.0 37 ............................. AGAACAGGTGCTGGGTCAACTTGCCCTCCCATTTTTT 421520 29 100.0 35 ............................. TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 421456 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 421390 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [421366] 421324 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 597925-598102 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKB01000001.1 Listeria monocytogenes strain FSL L7-0230 NODE_1_length_598122_cov_88.918117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 597925 28 100.0 47 ............................ GACTTGTTACTGCACTACTAGCAAACATATTCGACATATTCAACGCA 598000 28 100.0 47 ............................ AGCTTGTCACTGCAGTTTCATAAAACATATAGGCCATAGCCGTCACT 598075 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================== ================== 3 28 100.0 48 TTACTTGTATCAAAATTACTTAAATCTA # Left flank : AAAAGTTAATCCATGATGCAGGCATTGTTTCTAATACGGTAATGGTCGCTGTGCTAGTAATCCCACCGTAACTATAATCTACTGTAGTCACGCCTGGCTTCGTCGTATCTACAGAACCTGTTACAGTGATATCTTTAAAATCTACCGGATTTCCTGCATTATCTAGTCCACTCAAGAAATTATTTTCTGGAGTCCAAGTGTCTCCTACCATTAAAATACTATCTTGCACATTCACTTCTAGTAATACTGGCTGCCATACATACGTATCAGCCATGGTAGAACCAGTATAATTGGACATTAACTCCGTTGCAGTCCCTATAAATGAACCTTTTGGCTTATCCACTGTTCCACTACTCACATTTTGCCATTTTCCAGTATAATCAGCGGTTGTATTAGGACTAGGCAAATTTGCATCAGTACTCAAAAACTGAAAATCGTTTCCTAAAGTAATAATCTGTAATTTAGAGACTGCATAAAACATATAGGCCATAGCCGTCACT # Right flank : GACTTGTTACTGCACTACTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACTTGTATCAAAATTACTTAAATCTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //