Array 1 441931-442144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEU01000001.1 Micromonospora purpureochromogenes strain NRRL B-2672 contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 441931 28 100.0 32 ............................ TTCGCCACCGGCGTCAGGTGCCCCCTACGGTT 441991 28 100.0 32 ............................ CGCCCAGCCCGCTTCCGGCGCGCCCTACGGAT 442051 28 96.4 37 ......................G..... GGCGCCGCAGCCCGCGGTGTCGTACCCGGGGCAGGCC 442116 28 78.6 0 G..TT..C...G...............C | C [442131] ========== ====== ====== ====== ============================ ===================================== ================== 4 28 93.8 34 CGCAGCCGGCCTCCGGCGCGCCCTACGG # Left flank : GGCCCTCCCGGAGGGGTCCTGGTGGTGGTGCTGGGATTCTGTCCACGCCTGTGACGCGCGTCAATATAGACGGCGCTCACTAAAACATGTCCCGGGATGTGGTCCGGCACCGCCCGGTGAGGGGTGGCTGACGCGGCTTGCGATGTTGCGTACGTCACACTTTTCGGCGGCCCTGGAGTCGGGTACCGGGAGCCCGTCGAAGGGTCGATTCGTTGCGGCACAACGCTCCCCGGCGCAGTCACCCCTGGTGGGTGGCCCGGGGTCGGATTCGGGGAGGCACGCACCGGAGCCACCCCGGCACGGCTGGTGAACGACCGATCGAATGTCGGCGATCCTGGATTTGCGGCCGTCATTACGCTGCGAAGTGGTTGATCGCCGGAACCACGGACGACAGGTGGAAGAACCTCAGATGAGTGACAATCACCCTCCCTACGGAGGCTATCCGGACCCGAACGCCGGAGCGTGGGGCAACCAGCCCGACCCGAACGCCCCGTACGGCG # Right flank : CGCCCGGCACGCCCCAGGGCGGCGGCGGCAAGAGCAAGGGGCTGATCGTCGGCCTCGCCGCCGGCGCGGTGACGCTGACCCTGCTCTGCTGCGGCGGCGGGCTCGCCTACGTCGCCTTCAACGGCGACGAGGAGGACCCGAAGCCGGTCGCCTCGGGCAGCGCCACCCCCGGCCCGGACGGCAGTCCGTCCGCGACCCCCAGCGCGGACGCGCCGCAGTCGACCGGGCCGGACGGGCCCACAAACAACGACTCGATCACCGCGCGGTACGCCAGCGAGATGTCGGCGGTCTGCGACGGGGGCGCGATCCTCAACGCCGCCCCGTACACCGCGCCGGCGGGCTCGAAGGCGTACGTCTTCTCCAACTCCCCGGACCGGCCGACGTTCTGGTCGCAGAAGACGATCAGCTCGGCCAAGCCGTACTACGCCAAGTCGGCGGACTTCGCCACGGTCTCCGTCATCGGCTGCCTCAAGATGGTCGAGGGCAGCGAGGGCACGCCG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCAGCCGGCCTCCGGCGCGCCCTACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 101785-101390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEU01000019.1 Micromonospora purpureochromogenes strain NRRL B-2672 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 101784 28 92.9 33 .G.....................A.... CATCGTCGCCAGCCACCCCAAGGGCTACCTCAT 101723 28 100.0 33 ............................ GACCCGCGCGGACGCGGTGGCGCTGCTCACCGA 101662 28 96.4 33 ..............T............. CTTCGAGCGGGTCAGCCTCGACGAGGTGCCCGC 101601 28 92.9 33 A...........T............... GGCGCTGGAGACGATCGACGGCCCGACGTACGC 101540 27 89.3 34 .............G...A.......-.. TCGGGAAGTTCGCCACCGCACCGGCGTGGTCGAT 101479 28 92.9 33 .................A.C........ CCAGGCCGAGACGGGGAACGCGGAGCGCCGCGA 101418 28 78.6 0 .C..............GA...C.A...G | A [101392] ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGATCGGCAGCTCACCGAGCTGGACAAGCTCATCGCCGACCGATTCCACCGCCACCACCACGCCACGGTGATCACCAGCATGGTCGGCATCGGAGACCTCCTCGGCGCGGAATTCCTCGCCGCCACCGGTGGCAACCTTGACGGATTCGCGTCCGCTGACCACCTCGCCGGCTATGCCGGACTCGCACCCACCCCACGCGACTCCGGCCGGCGCGTCGGGAACCTCCACCGCCCAAAGCGATACAACCGCCAGCTCCAACGCGTCTTCTACACATCAGCCTTGATCAGCATCCAGCGCAGTCCTGCCTCAAAGTCGTTCTACGAGCGCAAACGAGCTCAGGGCAAACGCCACGGCCAAGCCGTCCTCGCCCTGGCCCGGCGCCGCGTGAACGTGCTCTGGGCGATGCTGCGCGACGACCGACCCTACGAAGAAGAGCAACCTCTGACCGCCCTCGCCACTTGACAAACAGCATTGAGAATCAGGCGGAGCCGACAGGGGC # Right flank : TTCACCTCGTCGAGTTCTGTTCCTCCAAGATGCAGGTATTACGACACCAACAAGTCCAATGTGTTCCGGAAGCTAGCGCTCAGGCTTTCAACGATCCGCTGCCCCTTGCCACTCGCTGCGAGTGAGGGACGTCCGATCACCCCGGACTCGGTGTAAGCGCCCATTCCAAGCGTGAGCAGGTGCGGATGCTCGGCGACGTGATCGCTTAGCTCGTAGCCGTCGCGCACGGTCTCCGGCGCCACGTGAAGCAGAATCGAGGTCTCAATCTCCCCGGCGTGCATGTCGTCATGCAGGGTGCTCGCGATGCCGGCATGCTGGCATGCAGCCTCCCAGGCTGTCCGATTCGGGAACAGCGCGAGCTGAGGTCCGGCGACGTTGGCTTGCTGCACGATGTTCGAGAGCACGTAGTTCCCGCCGTGACCGTTCACGATCACGAGGCGCTCCACGCCCGAGCGCTGAAGCGACTCCCTCACATCGGTGATGATCGCGTCTAGGGTGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //