Array 1 1956004-1957051 **** Predicted by CRISPRDetect 2.4 *** >NC_016818.1 Rahnella aquatilis CIP 78.65 = ATCC 33071, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1956004 28 100.0 32 ............................ AGCACGATGGGGCTGCTAACAAATCCGGTTGC 1956064 28 100.0 32 ............................ GAGAGCGCGGTTGCGCCCTGGTCAGGCTTGCC 1956124 28 100.0 32 ............................ TGAATGGGTGAAAGAACCAGAATCAGCAGAAG 1956184 28 100.0 32 ............................ GCACAGGTTGGCATCGCGCAGGTTGGCACCGC 1956244 28 100.0 32 ............................ GCCGCAAACTATCCACTTGTCATTAATCCATT 1956304 28 96.4 32 ....................T....... ATCATGCAGGAAGATCAGGGCCAGTTGTTCAC 1956364 28 100.0 32 ............................ GCAGAAAATTCAGCAGTTTGTCCGCTGCCTTT 1956424 28 100.0 32 ............................ AGAGCGTGAATTTGCTCGGCGGTGAGTTTTGA 1956484 28 100.0 32 ............................ AACACATTCAGCGCTCGCAAAGGCTCATTGCG 1956544 28 100.0 32 ............................ TTAGAGCAGAAAGCGTAGAGCCCTCAACGCTG 1956604 28 100.0 32 ............................ GGCAGGATGATGCAACAAAGGCTGCATTTTCC 1956664 28 100.0 32 ............................ TCGGCTGGTAACCTTGGGGGTTTAGTCGGAAT 1956724 28 100.0 32 ............................ TTTGTGCGGATTGAAGCAGCAGAACGCCGGAA 1956784 28 100.0 32 ............................ CACGGAAGCCGATCTGTATCCCGAAGAAATCA 1956844 28 100.0 32 ............................ GGATGAACGGAGCGGCGCTGTGCGCGTGTTTC 1956904 28 100.0 32 ............................ TTGCCATGGCTCGATAGCTGTCAGCATAAGCC 1956964 28 100.0 32 ............................ TCTTATTTTACTCGTTTAAATGCATAGGTTCC 1957024 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTAGATTCGGTGACGAAAATCTAACGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCGGAGACCCGCAATCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGTCGCAGGCACGACGGACATGTTCGGCCACTCCGGCGTATGGCGCAAAATCTTGCCGCTCAGCGGTGCCTTCATTTCGGGATTCCAGCCTGGGGTCTGGAACCTCTCATTCAGCAAGATTTTTGAGCACGCCAGTCTCGATCGAATAAAAACCCCGTTCTGATTCTCTCGCAAAATCAAATGCGGAAGGGTGTTGTCTTGCTCCGTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTATGAATGGCATCTCGTCATTAACCCTCTTTTTTGCACTTCCGCTAAGTCATTGATTTTCATTAACCAATAATACCCTCAAAAAAAGAGGGATTTTCTGCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAATGCAACG # Right flank : AACATACCGCATCGGTATGCGTTCGACGTTCTGGCCAGGCAGATGACTGCCGCCCGTAAAAGCACGCTTTACCCGGTAAACTCATCCTTATGAGAGAAAAGCTTTTAGTCACAGTTTCCTACAGAGAAGGCCGGAATATTCCGGCCTTTTTTTATTTTTAATCAATAATTCCCCCGTTACAGAATTTTCATGCTGTACAAAAATTGACGATAATTTGACTTAGGGATAGGTTGATTCCACTGCTAATGCAGTAGGTTAGCCAGCATGTTTCGCGCTGGCTCTCTCTTTAAAATGGAGTTTAAAACTATGGCTATTCCAGCTTATCTATGGCTCAAAGACGACGGCGGCGCGGACATTCGCGGCTCTGTAGACGTTGCGGGCCGTGAAGGCAGTATCGAGATCCTCGGCCTGAATCATGGCGTCAGTATTCAAACCGACAACGCCACGGGCAAACCTACCGCTACCCGCGAACATTCCCCTTACAGTTTTGACAAGGAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1961543-1962710 **** Predicted by CRISPRDetect 2.4 *** >NC_016818.1 Rahnella aquatilis CIP 78.65 = ATCC 33071, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1961543 28 100.0 32 ............................ TTGGATAATCTCAGGGAACTTCTCCCAACATT 1961603 28 100.0 32 ............................ GTACTTAGGGTCTTGCACATCCTGATACCAAT 1961663 28 100.0 32 ............................ TAAGGCCACGTGGGAAGTTGCGGCAAACTCAT 1961723 28 100.0 32 ............................ AGTTACGACCACATCACACACAACACGCCCCG 1961783 28 100.0 32 ............................ ACCTTCCGTCCAAGAACTTAGGAAGTGTTCGA 1961843 28 100.0 32 ............................ AAACGGCGATGGCCTGTGTGGGCGGATAGAAA 1961903 28 100.0 32 ............................ TGGGAAACAGACACCAACAAGCTAATGAAGAA 1961963 28 100.0 32 ............................ TTTGACCAAGAATCGGCAGACTTTCTTACATC 1962023 28 100.0 32 ............................ GCCGAACATCCGCGCCTGATAATCTGCGTGTG 1962083 28 100.0 32 ............................ AATCTAAAAGAGTTCGGTTATCAGATTTTTAA 1962143 28 100.0 32 ............................ AAGCTCTCAGGAGATTTTGGGTCATCGATAAC 1962203 28 100.0 32 ............................ AAGCGGATCAAGGGCGCACCGGACATTAAACG 1962263 28 100.0 32 ............................ GCGCTTTATCAGATGGGTCAGGCGTTCAGTTC 1962323 28 100.0 32 ............................ GCGTGATGCCAACAGCTCTGCGCGAACGTCGG 1962383 28 100.0 32 ............................ TGAGCGTGGAAGAAGCCCGAAAAGTTAAGCAC 1962443 28 100.0 32 ............................ GAAAGCACCCGAACCAACGGGAAAGAAAACAT 1962503 28 100.0 32 ............................ AATCAACATTATTGTTAGCCCAATGATTCCTT 1962563 28 100.0 32 ............................ ATAACGCCATGACTAGGATTTCCAGCGCTTGT 1962623 28 100.0 32 ............................ GCTATATCTGTTGTCTCAGTCATAAGGCCTCC 1962683 28 85.7 0 ....................AAA.A... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATAGCGATCAGGGCTGGCAATATAGGATGCCTTCGTGGCAAAAAAGGCTCAAAGAGGCAGGGATAAGACAGAGCATGTCGCGAAAAGGCAATTGCTATGACAATGCCGCAATGGAAAGCTTTTTTGCGGTGTTGAAGACGGAGATGTTCCACGGTTATAAGTTCGAGAGCAGGGAAAAACTGGCTGAGTCGATAGAAGCGTATGTCGCTTACTATAACCACGATAGAATAAAGATGAAGTTGGGTGGAATGAGTCCAGCAGATTACCGGACTCAAATGTTCCCCCTGCACTAACCTGGTGTCCAAGTTTAGGGGTTCAGTCCAGCGAAGGGGAGGGTTGGGGTGGGGTATTAATGGCACCTCTGAACTAACCCTCTTTTTTGCACCTCCGCTAACCCATTGATTTCTATTAACCGACAATGCCCGCAAAAAAAGAGGGTATTTCTTCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAACGCAACT # Right flank : ACCTATCCCCGCCCCAAATACTCAACGGAATAAATTTAACAGTTTAATTAATTCACTAATGATTCACATCTGAAAACAAAATAAAATTTACTCACGCAAATTTATCCAAAAACAAATGCATCAAACCGTTGATGTTTTTGAAAATGGGATTATTTTAGATCCGGTCATTTCTCATATGAAAGGAACTCAACATGGCCAACGCATTGATGCCCGCCGAGTTAAAAACGATCCTCCATTCCAAACGTTCAAATATTTATTACCTGCAATATTGCCGTGTATTGGTCAATGGCGGGCGGGTTGAATATGTCACGGAAGAAGGGAAACAGTCGCTGTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTGGGAACCGGCACATCAGTGACGCAGGCGGCGATGCGTGAGTTTGCCCGCGCGGGGGTGCTGGTCGGGTTCTGCGGAGGCGGAGGAACGCCACTTTATGCGGCGAATGAAGTGGAAGTGAATGTCTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1973190-1973396 **** Predicted by CRISPRDetect 2.4 *** >NC_016818.1 Rahnella aquatilis CIP 78.65 = ATCC 33071, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1973190 28 82.1 32 CA.TG.......A............... GCGTGGTATTCCTCCATCAGCTCAATACCAAT 1973250 28 100.0 32 ............................ CAGCTTCCCGGCATGATGCCGTAGTGCTTTGC 1973310 28 100.0 31 ............................ TCCCGCGCAGCATCAGCAGGAGAATTCACCG 1973369 28 85.7 0 .........T..A...A......C.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTTTACCGTTTACAGACTTGGGTAAGTGCTATCCATGACCTGGGCAAGAATGATGATATGAGCCACAGTGTACAGCAATGACAGAATCATAAGGGGCTTCGTAATATGGCCCATATAACACTTAGCAACGCTAGGACATTGGGAATATCCTGAAGGCATCATAGACTGAAAAACTTTGAACACAAATACTGTGGATATATTGAGGAAAATCAGAAGGGAGCGAACCGGCGAGCACATTCAACCACGAGGCATCTGACCGGTTGCTGTCGTGACGATGAAAATATAATTTTGGTTGTTTTTGGTATCAAGAGAGACAACGAACTTCATGACTTAGGATGAAACCAGTCATTTGCACTTCCCCCTCGTCATAAAAAAAATCTCCCCAAAATCATTTTTAACTATATGAAATAAAAGGAATTTATTTAACACTTCAAAGCATGTTTTTTGCATGGGAAATGTAACGTATCTATATGATTTATTGAGTTTAAGTTGAGTTTTTA # Right flank : ACCGTTGGCCGCAGGAACTGGATAAGCCCATTATCAATCATTTTTACGGAATCATGGAGAATCAGGAAAGAATGAAAAAAAGTGATTACCACAAACTTTGATGCCACCCTTAAAGGTATCTGGCACTTTATGTGTAAACCCCTATCACAGCAGCACAGGAAACCCCGCCACCATCTCAGCGGTAGCAGGGTTAGGTAAGACTTAGTTTTAGGATATGGTCACTTTGAACTCATAGTCTCCTGAGGCAAACGGCAGTTTTACCGGCGTTTGGTTCGGCGTGGTGTACAGAATTTGCAAGGCGGCTTCGCCAGGACTAATACCTGTCATTTCAGTATTCATGTACAAGATTTTATCATCTGAGAAAATTGCCTGTCCGGTCGCAACAAAAATATTGGAGTCTGTTGATTGTACGGTAAAATATTCAAAGCCACTATGTCCGGAAAAATAGCTTGATGTATATGTATCTAACCCTGTGCAGAGGTATATTTCAAATATATTAT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //