Array 1 7193-2981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGL010000041.1 Clostridium perfringens strain P8 NODE_41_length_30580_cov_74.0281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7192 29 100.0 36 ............................. AGAACAAGTATAAAATTAGTAGAGCCACAGAAATAA 7127 29 100.0 36 ............................. TTAGTTCCTGTTATCGAACAAGAACTTGCACCAATT 7062 29 100.0 36 ............................. GGAACAAATGGTCAAGATGGAGAAAGTCCTAATTTA 6997 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 6932 29 100.0 35 ............................. ACGGAGAGTTTGATGTTTATAGTAGCTCAGAAAAG 6868 29 100.0 37 ............................. ATGATAATAAGTATAGTATTTATATTAGTAGTAGTAG 6802 29 100.0 36 ............................. AACAAAACATAAAAACATTACAACGCCTGTTATAGG 6737 29 100.0 36 ............................. TCTAAGATAGTATTAGTTAAATTTAAGAAAAGTGCA 6672 29 100.0 37 ............................. GTTAAATATACAGAAGGTGGGTATAGAATATATAAAA 6606 29 100.0 38 ............................. ACTAAAAAACTCAAAAACAAAAACAAAGGTTTAAACAT 6539 29 100.0 36 ............................. AGAGAGGGTTATTTTGTAGATACTTTTAATAATTTT 6474 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 6409 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 6344 29 100.0 36 ............................. CATTTATATAAACTAGAATGTGAAGATGATTCAGCG 6279 29 100.0 37 ............................. GTTGAAAGTACTTTAAGCATTACTTGTACCACTCTTC 6213 29 100.0 36 ............................. TAGAACCTTTACCGCCTAGCACTTCAACACCTTTCA 6148 29 100.0 36 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGTA 6083 29 100.0 37 ............................. TAATATTCCACTCCTTACTTAATAAACTCCGAGGACG 6017 29 100.0 36 ............................. GGAGAATTAGTCCAAGGAGTTTTTAATGCAGATATT 5952 29 100.0 36 ............................. AACTTTATTAAAATAATAGCTGCATATAATATCTTT 5887 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 5822 29 100.0 36 ............................. TGAGATTTTTTAAATCTATAGTGCTATTCGGAGTGT 5757 29 100.0 36 ............................. TTTGTGAGTTATAATAAGATGCTGGAAGTCCAGTTA 5692 29 100.0 36 ............................. TATAGTATCTTTAATAAATTTTGTAGTAGTTGCACA 5627 29 100.0 36 ............................. TTAGATTTAGCATGTTTATCTAAGATAGCAAGAGCA 5562 29 100.0 36 ............................. AGAATAGTTTATAAGTTCTTATAATAATAAATATTA 5497 29 100.0 37 ............................. TTTAATTCTGAATCTTTCTCCAGCTGGTATTTTTCCA 5431 29 100.0 36 ............................. TGTTTAACTATTTATTTTCAGTTGTTGGTACAAAAT 5366 29 100.0 37 ............................. AAAGAACTTGAAAAAGAGCTTGACGAATTTCATGAAG 5300 29 100.0 36 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCA 5235 29 100.0 37 ............................. TTATGGTATGCATGGTATAACTCTAAACTTAATAGAG 5169 29 100.0 37 ............................. AAGTTTTCAGGATAAACATAGAAACATTGTGAAGTTG 5103 29 100.0 36 ............................. CCATAAACCCTTTGTTTTTTAAAATATCTCTTACAC 5038 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 4973 29 100.0 38 ............................. GTTGAATAATTGAACCATGTTTCTCTCTATCTTTATAG 4906 29 100.0 36 ............................. GTAGCTCCAGAAACTTTAGCTGAAAAAGCATTAACA 4841 29 100.0 38 ............................. GGAGTTAACTCATAATCTAAAGTATTATCTCCAGGAAT 4774 29 100.0 36 ............................. AAATCAACCATATTGGTTCCATACAGAATTTCAAGA 4709 29 100.0 36 ............................. ATATCAGAAAATAGATTAACAAGGGGACTTAACTGA 4644 29 100.0 36 ............................. CTCTATTTTTACGCTTATTAAATTCAACAATATTTC 4579 29 100.0 37 ............................. AAGTTTTAAACTCATCTATAAAAAAATTATCGCTAGG 4513 29 100.0 36 ............................. GCGTTTTTGCATGGGATGAAGTTCAAAACGAATTTA 4448 29 100.0 37 ............................. TAAACTTAAATAAATATAATCCATAGTAACCTTAGCA 4382 29 100.0 36 ............................. TAAATATTAAACTATTCTTACAGATGACTTACTACA 4317 29 100.0 36 ............................. GAGTATATCAAGCTGTAGAACACAAACATGCTACAT 4252 29 100.0 37 ............................. ATGGGTAAAAGTGTTGTAAGATTGCTAGTAACAGCAG 4186 29 100.0 36 ............................. GATGTTAATAAGCGTATTAAAATAAAACCACGTAAA 4121 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGGAAGGTTAAA 4056 29 100.0 36 ............................. TGTCGTTTTCGGTGGATTAACTCTTTTATTTTTAGC 3991 29 100.0 36 ............................. GAAGTTACATGAGCATTATTTATAATTGTAGTCTCA 3926 29 100.0 37 ............................. CCCAAATGGAATATCAACAGGATTACCAATATTAATA 3860 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 3795 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 3730 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3665 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3600 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3535 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3470 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 3404 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGCATGGTTTTGT 3339 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3273 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 3207 29 96.6 36 ......................G...... GTTGGAACTTCTTTATATCAGCTACTATATCAGTGC 3142 29 100.0 37 ............................. GGGAATTAGGTAAGAAGTTCTCTATATTGTATATTGA 3076 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 3010 29 86.2 0 .................GAA....C.... | C [2983] ========== ====== ====== ====== ============================= ====================================== ================== 65 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //