Array 1 27655-28547 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAKDU010000002.1 Streptococcus sp. ZJ373 Scaffold2_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
     27655	    33	 100.0	    33	.................................	AGGGCGCCAGATTTTAATTCTCGATAATTATCC  	
     27721	    33	 100.0	    32	.................................	CAACCAGTGTACTACCCTATCTTCTGCTTTAG   	
     27786	    33	 100.0	    33	.................................	GGAGTTGTGTAGTAGCTCACTAGGCGCTGAACT  	
     27852	    33	 100.0	    33	.................................	CTTTTTTATTTATAATTATTGATTGGCTATACT  	
     27918	    33	  97.0	    33	................................A	TTTTTTTGCTTCCTTTGCTTTTTTGTTTGGTCT  	
     27984	    33	  93.9	    35	...........T....................G	AAGTCTTTGGGTTGAATATGTGGCACAACCTCTCG	
     28052	    31	  90.9	    34	............--..................A	AAAATTTGTGAAAGATTATGACGATTTTATAGCT 	
     28117	    33	  97.0	    32	................................A	AAGCGTTTGGCTGGACAGCTGTAGGAACTAAT   	
     28182	    33	  97.0	    33	...........T.....................	ATCAAAAAGATTATGAGCAGGCGCTTTTAAAAG  	
     28248	    33	  90.9	    33	........T..T....................A	TAATAAGACATCAGGTCTATGGGAGCTTCTGCA  	
     28314	    33	  93.9	    34	...........T....................A	GAGTTTGAGGGATGTTTTTGTTACGTTAGATTTA 	
     28381	    33	  93.9	    34	.......T........................C	CATAGCAAGGCTCAAAGCGTTATTGAAGAATTTT 	
     28448	    33	  97.0	    32	.....G...........................	GAAATTAAGAGATAACCTTTTTGAGTTGGGTA   	T,A [28455,28458]
     28515	    33	  90.9	     0	...........T........C.A..........	|                                  	
==========	======	======	======	=================================	===================================	==================
        14	    33	  95.9	    33	GTCGCACCCCACACGGGTGCGTGGATTGAAATT	                                   	       

# Left flank :   TAAAGCAATTCGTGGGGAATTGGAATCCTATCCGCCATTCTTAATTTAGGAGTCAGTTTATGATGGTTTTAGTGACTTATGATGTGAATACAGAGACTGCTGCAGGCAGGAAACGTCTCCGTCACGTTGCGAAGCTCTGTGTCGATTATGGTCAGCGCGTGCAGCATTCAGTCTTTGAATGTTCTGTGACACCGGCTGAATTTGTCGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTATCTTCTTGGCAAAAATTGGCAAAATCGTGTAGAAACTCTTGGTCGAAACGACAGTTATGACCCTGATGCGGGGATATTACTTTTATAAAAACTTGAGTGCGAACCTAGGTTGCACATCAAAACCTAGGACACTCGCGCACAAAAATACAGAACTGAGTGGCAAAAAGTGTTTTTTACTGATAAAATACCATCAGTGACTAATAACATTTAGCCCCAAACGGTGCAACTACGCGCC
# Right flank :  TTGGTGGCGGGATCATTTACAAGTGTACGGCTTCGTTGTCCCCCTACCTCAAAAACCAGTCTATGTTCCACCAGATCCTTAACAGAAAAATACGGTGTTTAGCCGTATTTTTTGCTATAATGATGGCAAAAAATGGAAGGAAAGCACGGATGATGCAGGGTAAGCAAGCTTGAATAATACCCTGAATACGATAAAGATGAGTAGGAGTTTTATGACGAATGACACAATGTGGTTTGACCAATTTTCAAATAAGATATTGGATAAGGGATTTGATTATTATCAAGCTGGCTGTGTTTGTGGTTTGATCAAAACTTCAAGGGGGTATCGCGCCTCTGTGTCTGGGAATGAAGATTACGAAGTTATTCTAGAAATTGATAATGATACTCTGGGGCAAATGTGGTGCGACTGTCCTTATGCCTTAGAAGGGCATAATTGCAAACACATGGCTGCGGTTTTATACGCTATCGGCGATGATACTGAAATCAAGAGTTTAGACGTAG

# Questionable array : NO	 Score: 5.50
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCCACACGGGTGCGTGGATTGAAATT
# Alternate repeat :   GTCGCACCCCATACGGGTGCGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.10,-9.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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