Array 1 263789-265098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTZ010000003.1 Escherichia coli strain 71 Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 263789 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 263850 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 263911 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 263972 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 264033 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 264094 29 100.0 32 ............................. TGGGAACTGGCCCGAGCCATTGGTCAGGGGAA 264155 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 264216 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 264277 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 264338 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 264399 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 264460 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 264521 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 264582 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 264643 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 264704 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 264765 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 264826 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 264887 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 264948 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 265009 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 265070 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTCATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34029-34898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTZ010000015.1 Escherichia coli strain 71 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34029 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 34089 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 34149 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 34209 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 34269 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 34329 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 34389 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 34449 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 34509 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 34569 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCACCCCGCTC 34629 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 34689 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 34749 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 34809 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 34869 28 85.7 0 ....................A...C.CT | T,C [34889,34893] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40235-41523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTZ010000015.1 Escherichia coli strain 71 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40235 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 40295 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 40355 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 40415 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 40475 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 40535 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 40595 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 40655 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 40715 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 40775 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 40835 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 40895 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 40955 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 41015 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 41076 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 41136 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 41196 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 41256 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 41316 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 41376 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 41436 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 41496 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6708-7407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTZ010000032.1 Escherichia coli strain 71 Contig32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6708 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 6769 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 6830 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 6891 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 6952 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 7013 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 7074 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 7135 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 7196 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 7257 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 7318 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 7379 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //