Array 1 49035-45912 **** Predicted by CRISPRDetect 2.4 *** >NZ_POOL01000560.1 Streptococcus suis strain 794 SS_0794_Contig560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 49034 36 100.0 30 .................................... GGCTCGTTTTCTAGCTTGGTATAGTGGTAT 48968 36 100.0 30 .................................... ACGTTGCAGTTGAATTTGGAGTTATTCAAA 48902 36 100.0 30 .................................... CATGATGGGCAAGGTAGATACCCTGGTTCT 48836 36 100.0 30 .................................... TCTTGTTATCGAGTGAAGATAGCCGGCAGT 48770 36 100.0 30 .................................... AATAAAAATTAATGTTAAACAAACTCAATT 48704 36 100.0 30 .................................... AACATTGCATGATAAAAATGTTCAAGGTTA 48638 36 100.0 30 .................................... TGACTTATCAGCACCGCATTCTTCTAATAA 48572 36 100.0 30 .................................... TTGGGGATATGTCGAATAAAAAATAAAGAT 48506 36 100.0 30 .................................... GGCCGAGGAATATCATCGGACGAGGTATGG 48440 36 100.0 30 .................................... GCGTGACAGACGTATGCGCTGTGATATGTG 48374 36 100.0 30 .................................... TTTTTCAGCATAAGTTAATTTTATAGTAGC 48308 36 100.0 29 .................................... TTTAACTATCTAAATTCTTTTTATAGAGG 48243 36 100.0 30 .................................... CGTAGCTTTGCCATTAATAACTGCCATGAC 48177 36 100.0 30 .................................... AATTACAACTATTGCAACAACCCCTGCCAT 48111 36 100.0 30 .................................... GTCCATGTAGGACTTGCGGACGTTGCCGTT 48045 36 100.0 30 .................................... AATTACAACTATTGCAACAACCCCTGCCAT 47979 36 100.0 30 .................................... CCAGCAGTAACACTAATCTATATCTGTGTA 47913 36 100.0 30 .................................... ATGAATTTTGCGTTTAGTAGTTCTGAGGGT 47847 36 100.0 30 .................................... TAAATAAAATTTTATATTAATATCTGATAT 47781 36 100.0 30 .................................... GTATGGTGATGGTCAATGCTATGCTACTAC 47715 36 100.0 30 .................................... TAAATGATACAATTATATCAGTTAGAAATG 47649 36 100.0 30 .................................... AATGTATAACATTTTAACAAACGTTGTAGA 47583 36 100.0 30 .................................... CAATCCTAAAACATTTGAAGCTGAGTTTGT 47517 36 100.0 30 .................................... AGAAATTAGCAGTGCTGAGAGAGTGATTCT 47451 36 100.0 30 .................................... AGGAAATCAACGACGGTCTCGAGCAGTCCA 47385 36 100.0 30 .................................... TAGAATATGACGGTTATGTATATATTAGCT 47319 36 100.0 30 .................................... TATAATAAAACACCCTAAAATTATATACTT 47253 36 100.0 30 .................................... ATTCCAACTACCGTACAAGTCTTCCGCTGT 47187 36 100.0 30 .................................... CTATATATCATAAATTAAACATAGGGAAAT 47121 36 100.0 30 .................................... TCGCCCGTATACCGATTTCAAGCTCCTCCT 47055 36 100.0 30 .................................... GCGTTGTGACGGTTTACTTTGAGAATGTCT 46989 36 100.0 30 .................................... AAGACTGTCGAGGACAATCTGAGCCAAACT 46923 36 100.0 31 .................................... CTTGCGTTCTGCGTTGTCTACGGCTGTGCGT 46856 36 100.0 30 .................................... AAATCGTGATAAGATCGCTTGCGCTGTATT 46790 36 100.0 30 .................................... ATAGTACCAAGGGTTTAGACCTATTTTGAA 46724 36 100.0 30 .................................... GGGACACGGCACAAACGCAGTCACCACGCG 46658 36 100.0 30 .................................... GGGACACGGCACAAACGCAGTCACCACGCG 46592 36 100.0 30 .................................... AGACATGTGGATGAAAGCATCGCCTAATTT 46526 36 100.0 30 .................................... CACGCTCTAACGTTGTTTTAAATTGTATAG 46460 36 100.0 30 .................................... ACATAATCTGTTGCTTGTTCGATAGTTAGT 46394 36 100.0 30 .................................... ACATCGCAGTCATCATTGACCCTATCTACA 46328 36 100.0 31 .................................... AAATCCTCTCTGAATAATTCGCTCCCAGCCA 46261 36 100.0 30 .................................... TAATATAAATTTATTTTCTAATGAAATAGA 46195 36 100.0 30 .................................... TGACTTATAGAAATTGCATTGGTAGCAAGC 46129 36 100.0 80 .................................... ATAATATCAATAATCGTGACTTTCATAGCAGTTTCGAATGGTTTCAAAACATTTCTGACTTTGACAGTAAAGAATGTGCC 46013 36 100.0 30 .................................... CGCGTCTTAATTTCCCATCGTCCACGCTCT 45947 35 88.9 0 .........................A..A-.....G | T [45914] ========== ====== ====== ====== ==================================== ================================================================================ ================== 47 36 99.8 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCAGAATTTGTGACGGATGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //