Array 1 1477578-1480356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077713.1 Saccharolobus shibatae strain S38A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 1477578 25 100.0 39 ......................... AAGATAGTGAGATGGTAAACGAGGGTACACTACTGATTG 1477642 25 100.0 37 ......................... AGCTCCCGCTATTATTATCAAAGCATCTTCAAAATCA 1477704 25 100.0 36 ......................... CTCTTTTCTGTGCCTCCGGAGCCGGTGGTCCCGGGT 1477765 25 100.0 38 ......................... ATTTAAATCATAAAAATATTGCTTAATCCATCCATATA 1477828 25 100.0 41 ......................... TATCGCTTTCCAACAATATATTCCACCCCTTGTAACTCTCC 1477894 25 100.0 39 ......................... TATATTTACTTATGGTAAAAGATAAGTTTGTCAAAACTA 1477958 25 100.0 40 ......................... TCCCCTGATAATATTAACATTGCTTATATTGGCAGTTTTA 1478023 25 100.0 39 ......................... GGCTACTGTTAGCCAATGCCACATAGCTATATAATGGAA 1478087 25 100.0 35 ......................... TCTATCTCTTTCACGTCAATAGTTACGTTGTTAGG 1478147 25 100.0 37 ......................... TTTCAATAAAACCGTTTAAAATATCTGAATTATTTTT 1478209 25 100.0 45 ......................... GACATTTAATTGTAAACCTTCTATAGTTGGCGGTGATAGATATAG 1478279 25 100.0 41 ......................... TGTTTCGGAAGCAATTGTCTGACTTTCTCAACGAAACTTTC 1478345 25 100.0 36 ......................... TTCAATAAACTAAGTAAACTGTTCAATATGGCTGAG 1478406 25 100.0 41 ......................... GAGTAACAACGGGCAAGCGGGAAATCCTCAACCATTCACGA 1478472 25 100.0 36 ......................... AGCAACAAATTCAAACGTTTCTAGAGTCAGGTTACA 1478533 25 100.0 41 ......................... CATATTTCCTTACATAAAGTATTTTTCCATGAACTTTTAGT 1478599 25 100.0 40 ......................... TTTCTCCACATCCCCATACGACTTCACCTGAGCCATCATC 1478664 25 100.0 43 ......................... GCAGAAATAGTACTGGTGAGAAGAAGATGAAAGTCAGAACTAG 1478732 25 100.0 37 ......................... CACTGTTATGATATGGGCGATATACAACACTTAACGA 1478794 25 100.0 38 ......................... TCAAATTCAGGAGGACCCCTAAAAGAGCTTTCAGTATC 1478857 25 100.0 34 ......................... AACACGTCTTTATACGCCAAGATATTTGAAACGA 1478916 25 100.0 39 ......................... ACTATTACGGCTTCTTCCAGTCAGTTAGGAATCCACAAC 1478980 25 100.0 37 ......................... TTTTTACAAAATGCAATAAGTGATATAGTTTCAATTT 1479042 25 100.0 37 ......................... TTTTATTGTAAGCATCAACAATCTTCTTCCATATTGT 1479104 25 100.0 42 ......................... AAATATTTTCTATACAACACTTTGAACTCTTTTGGTACTGGT 1479171 25 100.0 39 ......................... ATTAGAATTGCTTGCACAAAATGAGTATCAGTTAGCACT 1479235 25 100.0 38 ......................... TAAAGACCTATAAGGTTTGCCCGCTTTGCTACAGCCTT 1479298 25 100.0 49 ......................... AATGAATACGCATAAAGGAAAAAGAGAAAACAAAAATACCCGGAATCGG 1479372 25 100.0 36 ......................... AATGAATACGCAGAATATAACCTCGAGGACGTATAT 1479433 25 100.0 38 ......................... GGTAGGTTACCAGTATGGGCCTATGTACATATTGCGAT 1479496 25 100.0 39 ......................... TATGTTCTTGCTATACTGGTCATAAGTTTGCTGATAATT 1479560 25 100.0 34 ......................... ACGGCTCGCATTCATCAGAGCTAACAATTTTGCT 1479619 25 100.0 42 ......................... TTTGTCATATGAACTAAATAATATTTTTCCGTATTTTATTAC 1479686 25 100.0 39 ......................... AATTGATTTGCATCTAGAAAAAGTGTTTTATTTTATTAC 1479750 25 100.0 38 ......................... ATATCAGTCGGCGGTTTATAGTTGATATTCAATAGTGT 1479813 25 100.0 40 ......................... TCTAACTCCCTAATCGTTATCATCTTTGCTCTACCCAATT 1479878 25 100.0 40 ......................... TGTGCTTTTTGGTGGTGGTGGCGCAGCAGTGATTGCTCTG 1479943 25 100.0 39 ......................... TTGATACAAATAAACCCAGTACCCAGTCGCTCCCCATCT 1480007 25 100.0 39 ......................... TTTGTCGTTTTGTGGTTGAGGAGTAGTTACGTTTACGTT 1480071 25 96.0 47 ...........A............. AGTTTCAGCAGTACTGTTTATACTCTGTATTGCAGTAGTTGATGTAG 1480143 25 100.0 37 ......................... ATATGAATCACCTAACCTTCAAGTATTTGATAAAAAT 1480205 25 100.0 39 ......................... TGGCGGTAGGCAGTTCATTCTGACACCATTTATAAAGTC 1480269 25 100.0 38 ......................... ATTATATACACTGCTGCTAATTACTATTGCATAAAGAT 1480332 25 96.0 0 .......................G. | ========== ====== ====== ====== ========================= ================================================= ================== 44 25 99.8 39 GATTAATCCTAGAAGGAATTGAAAG # Left flank : CCTTATATTAGGGAGAAAGTCTTGCCCTTTAAAGTCTCAAGGAGTATAATAAAAAGTAATTCTGACGTTAAAAAAATTTTACTTTATCAGCCTTAGTGAAATTAGGAAATATTGCGTATTTAAAAGTAAGTTTAAAAAGATAATTATACGTTACAGTGAAAGAAAGATGAAAGAAGAACGATAGAAGATAAAAAGTATATATCGATATGTTACGAAATTAGTGAAATATTATTATCATGAAAAGAACTTTAAATTTCGTTTTCATTAAGTAATTTAAAAGTGTGAAGGTTCGAGTCTCAATGCGACTAAGACGAATCTTTCTATAATAATTGAACGTTTATAAATGATGGGGTATATTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGATAGTCATGAAAATTTATAAGTGAGAAAGGTGAAAAGAAAGATAAGAAGTATAAAAACACAACA # Right flank : GTACGCAATAGAGCCTAAGTAAAATAATCCTCTATTAGAGTGAGAAAATAGCGTTTCGTTAACCATTAAGTGGTTTTACTTCTACCTCTCCAAAGCCAATGTTCCTACTCTTTCCCACGCCGAAGTAATTTACGTAATCCAATAGCTTTCTAACGTTCTCCCTTATCTTACTGCCTTTTCTAGCACTCAACTCAAACACAACCCATCCTACAAATCCCTTATTGGGTATGTTTCCGTAATAAGTAGTCATCGGTCTTATCCTATAGTTCACCTCTCTAAAGTAGTATAACGTCTTACTACCGGTAACTCCCACAATCTTCTTATCCATATATCTATTCCAGTGGGAGGCTATGGAGTAGAAGAGAAGTGGGACGTAAGGGAATAACACATACCTGTTCTCCTTTCTTTTCATCCTAGGCCTAGGGGGTTGTAAAAGCGTAGGCGTCTTGAAGTGAACTATGTAAAACCTGGCTTCCTCAACCATGATGTTTTCCTTTACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1492867-1497871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077713.1 Saccharolobus shibatae strain S38A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1492867 25 100.0 45 ......................... TTTGACTTTTAGTTTATACTGGAAAAGTACATTTACCTTCCTTTT 1492937 25 100.0 39 ......................... GAGTTTTTACGCACAAAAGTGAGTATTATAGAGGGTACA 1493001 25 100.0 41 ......................... TGCGTTGTTGTTATCCCTAGCCCTTGGTCTGTTACTGCCGT 1493067 25 100.0 38 ......................... GGAGGAGAGGGTGGGTTCGGCGGGGCATCGTTTAGCCC 1493130 25 100.0 38 ......................... ACGAGAACCAGACACTGGTAGCGAACCAACTTTATGAA 1493193 25 100.0 41 ......................... AATAGCTTTATTATTTTAAATGAAAGGTCTAAGGAGAGAAA 1493259 25 100.0 37 ......................... ACTTACACAGTTAACCATGTATAGTAACCTAATTCCA 1493321 25 100.0 41 ......................... CGAAGAGATTCAAAAAAAGACTTAGAATATTTTTTAAATTG 1493387 25 100.0 40 ......................... TCTTTTTTATAGCTTCAGAAATCAGTACCGAAAGAAGGAA 1493452 25 100.0 38 ......................... TTAGCTTCTTGGAATTTTATCGGTTTCGTGTGGACTAC 1493515 25 100.0 36 ......................... TTAATGCCTCTTCTGGGGTTCTACCAATACCGTGAC 1493576 25 100.0 36 ......................... TCATTCTTTCTGAAAGCTAACTTAAAGAAAGGTATT 1493637 25 100.0 37 ......................... CTTTTTACAATTTTACAACTTGTTCAAGTAGGAATAA 1493699 25 100.0 37 ......................... TTTCTTTCAATTGCATAAAGTCATCAATTGTTTTTAC 1493761 25 100.0 47 ......................... TATATCTATCTTCTTCATCTTCCGCCAAATCATGTGCAATTATATCT 1493833 25 100.0 41 ......................... AACTGAAATGCATTTAAGCGAAGCAATTTATACTTCACCAA 1493899 25 100.0 43 ......................... TAGCTACTCATAATAACTTTTGGCTTCGCAGTATTTAAACTTT 1493967 25 100.0 40 ......................... TGTATTAAATTTATCATATCATCTTCATCTTGTATGTAAT 1494032 25 100.0 39 ......................... AAGTTATGATGAATGTATATCAAAATTCAAACAAAAATT 1494096 25 100.0 38 ......................... AGAAGATCTAACACATATTCTATTAGCGGTAAATTGTC 1494159 25 100.0 37 ......................... GAAAATTTGACCCGCATCTTATAGCAAATAATCCTGA 1494221 25 100.0 39 ......................... TTCAATATTTTCAGAACAAATATTGGACTTGGACACACT 1494285 25 100.0 40 ......................... GCAGAATTAATGAAATTTAAGAAATTACTGTCTCTAGGAT 1494350 25 100.0 36 ......................... TTATCCCTCTCTTTAAAGTCTGAATAGATTATGTAT 1494411 25 100.0 39 ......................... ATGTCAGGTATCAGTTTAGCCATGACACTTGCCATCTTA 1494475 25 100.0 40 ......................... TTTAACTTTGTTACACCTAACTTAGCTACATTGTATTGCA 1494540 25 100.0 40 ......................... AAACTCATTCCACCTTTTATATGCTCTTCCATTTTTTCGC 1494605 25 100.0 39 ......................... ATATCACGGACTAAAACTATTCTTTTTATGACACTTAAC 1494669 25 100.0 37 ......................... TTTAGTATCCTAAAGCTTATACTGTCAGTGCCTAATA 1494731 25 100.0 41 ......................... CATTAAATGCATTTATGTAATAAGCTTTCAAACCAGCGATC 1494797 25 100.0 38 ......................... ATTCAAAATCAGCATTGGATAACTACATCATTGGATAA 1494860 25 100.0 39 ......................... ATTTTCTCTAATAGTATCTTCAAAAATTGGCTCAATTTT 1494924 25 100.0 36 ......................... TTTTTTATGTTAAAAGGTCACGTTAGAGAAATGCAT 1494985 25 100.0 40 ......................... TAAATCTTGTCAACTAACTCACAATATTCTTTATCAATCA 1495050 25 100.0 38 ......................... TTTCTTTCTCTATTTTATTTAGAATATCTTGTTGTCTG 1495113 25 100.0 35 ......................... AAAAGTGTAGGATAGTCAAGAGAAAAGAACATCAA 1495173 25 100.0 35 ......................... TTATTACAAGTATTACAAATGGAAGCAAAAATTAG 1495233 25 100.0 36 ......................... GCGTTATATAGCAAGTATTTACCTTGTAGTAGATAA 1495294 25 100.0 42 ......................... ATATCCATTTCTATACCATTTCCAATATGTATCGGATTGTCT 1495361 25 100.0 40 ......................... TACTTTTTCCACCTGATGCTAATACTAAACTTTTGATGTT 1495426 25 100.0 35 ......................... CAGTAAGGTTTATTAATTGGTCGAAAGGTGCTGGC 1495486 25 100.0 38 ......................... TGTTAGATTTTATTTTTTATCAAGACATCATGATGGAT 1495549 25 100.0 40 ......................... TCTTCATCTTTCGCGTCTATACTGAATACGTTATCTGATC 1495614 25 100.0 40 ......................... GGGTTCTCTATAATTGTTGTTAACCTCCGTGAAATATCGT 1495679 25 100.0 42 ......................... AATCCCCAACGTCAATTACATTCGTTGAAGAGTCTATTTTTT 1495746 25 100.0 36 ......................... ATATCTGTAACCGTAAATCCGATTAATTGCTTGCGT 1495807 25 100.0 40 ......................... TTGCTTGCACATGCAAATTTATCTCAAATCGCAATTTCTA 1495872 25 100.0 39 ......................... ATAAAAATAACGTATAACGGACAGACATATACTGTGCCG 1495936 25 100.0 38 ......................... AATTATTGTTTGTTATTGCTATATATAAACTTTGCGGT 1495999 25 100.0 38 ......................... AAATAGAATTGAGAGAAATATTTAATGCAATTGGTCTA 1496062 25 100.0 35 ......................... TCTTTATCATATATATAGTACCTTGAACCGTTTAT 1496122 25 100.0 40 ......................... ATACTCTGCCATTTTATGTTTATATAAAAAGAAAGGTAAA 1496187 25 100.0 42 ......................... GATAATATACCTTCAAATGTAGGTATGCTAATCGCCTTATCT 1496254 25 100.0 39 ......................... TGAGCGAGACGTATAATCACTACCAATTGGATCGATAAT 1496318 25 100.0 38 ......................... AAGAAATATGGAAATGTATAAGCTTCTGGAGCTGATAA 1496381 25 100.0 38 ......................... TTACATACTTCATTATATAACCAGTTATAGTAGATGCA 1496444 25 100.0 41 ......................... AGTCATTTACACGTAAGATAAGACTTTTTTTTATCTCGTAT 1496510 25 100.0 38 ......................... ATCATATGACCTCATAACGCCCACCGTGCCGAATAGCC 1496573 25 100.0 39 ......................... TCAGGTATTTAATCAACATTCTTTTTTATATAATCCAAG 1496637 25 100.0 41 ......................... AGGGCAATCAGAGGACCTGCTGACGAAGCTGATATCTTCTT 1496703 25 100.0 39 ......................... CAAAGAGTAATCACGTGGAGGGAAAAATTCGCAAAAGCA 1496767 25 100.0 39 ......................... TACAATCCTATAATACTAGGGCGAGGATAAAGGGAAGGA 1496831 25 100.0 42 ......................... TAGTGAAGAACTCCAAACCAATGTTAGTCCCCGACTTCTCTT 1496898 25 100.0 38 ......................... TATATCGCATATTGAGGCACCATAGGCTTAGCTTCTAG 1496961 25 100.0 39 ......................... CTTAACTCCGAAGCCAGCTTAAGCAGTGTGAGGAAATCT 1497025 25 100.0 39 ......................... ATTTGCAGTTATTATATTGTGGCACAGCGTTCAGACTTC 1497089 25 100.0 38 ......................... ATATTTGCTTATTCATATATCATTATTCAACTTGCTCA 1497152 25 100.0 41 ......................... TTGTAAGTTCACGCTCTTTAGCCAATTAGAAACCGCATTGA 1497218 25 100.0 40 ......................... TAAATTATTTTCCCCGCCCTTATTATTTTGGGTGGGATTT 1497283 25 100.0 38 ......................... TAGTATTCTTTTGATGCCTTTAAACAGAAGAGCGATTT 1497346 25 100.0 37 ......................... ATACGAAAGGATAATAAATGAGAAATTACCTACCTTT 1497408 25 100.0 40 ......................... GGGATTTTTTGTTTCCGGAGCAATTTTACGTGTAATACTA 1497473 25 100.0 38 ......................... TGAAGATATTGCAAAAAGATTGGGTGGGAAAGTCGATG 1497536 25 100.0 36 ......................... TTTGTAGCAATTGTCGGTATTCCTGAAACAAAGGCT 1497597 25 100.0 34 ......................... TTAGATATAAATGAAATAAAGAAACAGATACTAA 1497656 25 100.0 40 ......................... CTGCAAAGCCCTAAATTCCCTCAGCTTCATCTTCCTCTAC 1497721 25 100.0 38 ......................... AGTTGTTTAGCTAATTTCGCTGGAGGATATTCAACTTG 1497784 25 100.0 38 ......................... TACAATTAAAGCAGACCATCAATTTTTACTAGTAAAGC 1497847 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================================== ================== 79 25 100.0 39 GATTAATCCTAGAAGGAATTGAAAG # Left flank : ATGTGTAGATTAAAAAATAACCACAAGAGGATTCCTTATTTTTTTAATCAGTATTAATATTATATTTGTTTAAAAAGTTTTCACCAATACATTTCTGGATTAGACGTGGAATTAACGTGATTATAAGTCTTTTTAAAAGGATAACTATACGATGGAATGAAAAACAATTATACTAAGAAGCGCATTTACTAAATTATTGCTTATCGTCCGTAACAATTTTAGAGATATAGAATAACTAAGATGTTACCTAAAAGTTCGTTTTCATGAATAGGTTTAAAAGTGTGAAGGTTCGAGTCTCAATGCGACCAAGACGAATCTTTCTATAATAATTGAACGTTTATAAATGATGGGGTATATTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGATAGTCATGAAAATTTATAAGTGAGAAAGGAGAAAAGAAAGATAAGAAGTATAAAAACACATCA # Right flank : GAACGTTAACTTAAATTTGCCTACATGAGTTATATTTTTAGTTAAAGGGTTGATAAGATAATGTTAGATAAGAAGATTGTTTTCGTTAAGGATTGGGGGCTTATGTTAGAGTTAGTAAAGATATGATAACTTGTGTGGTAAAGGATGGTTAAATGGTCTTTATCTCCAACTGAAATATCATCAATTATAATTTTGACTAATTCCTCAATATATTCAGAGGTCATGAATTTGGCTAATCAGTACGGTATAGAAATAGTGTTCTTTAAAGGTAATGAGCCTATTGCTAAAATAATACCCCATCTTATGCTGGGTCTTTTAAGTTATGGTTAAGGCAAATAAGGGCGTGGAAGAGCAAGAAGGCTAATTTAGCTAGGGAATTCATATACGGTAAACTTCATAATCAATGGGTTACGTTAAGATACTACGAGAAGAAATATAATATTAATTTAAATTCCGGCAAATTATTACAGCTTGAAAGAGAGGTATTAGTTGAAAACACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1520638-1517074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077713.1 Saccharolobus shibatae strain S38A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1520637 24 100.0 41 ........................ TGAACCATATTTACACGGTAGAAAGAGAAAGAAAGTAATGG 1520572 24 100.0 38 ........................ ATTCGGCACTTAACATACTGATCGTAGCAGCTAGTTTA 1520510 24 100.0 38 ........................ GCTTGTTAAATGTTGCGTTGTATGGCGTTACGGTACCG 1520448 24 100.0 40 ........................ CACTGCATTCTGGATACCTTACTGTTAATTGGTTAAGGGG 1520384 24 100.0 40 ........................ TTTCGTAACAACTCATGTATTAGGTCTACTAAATCATCTT 1520320 24 100.0 40 ........................ ATTCCCGGTGCAAGTCCACCGAGAGCACCTAATACGCCTG 1520256 24 100.0 39 ........................ ACAATAAATGGCAACCAAAATGGAAACATACATAAGACA 1520193 24 100.0 39 ........................ TTAAGCCCATTATTCCTTTCCTTTTCTGGTAATCTTGTC 1520130 24 100.0 40 ........................ ACTGGAAAGCTTATTAGTAGATGCTGCATTAAGCGTGAGT 1520066 24 100.0 40 ........................ AATAGATATCCCAATATTGCTCCTATGAAAATTCCCGCTA 1520002 24 100.0 38 ........................ TTACTCTCACCCATTGGACAAATGTTGTAGTTTGATAA 1519940 24 100.0 38 ........................ TATCGAGATAGCCCTGATACTCGAATGGTTGTGTTCCC 1519878 24 100.0 39 ........................ AGGATTTCTCTGGCAATTATAACTTGCTCATGGTCAATA 1519815 24 100.0 39 ........................ CTTCCCTGTGGCCAGTAATCAGAATAAACCTACCTCCGA 1519752 24 100.0 38 ........................ GCTCAACGTTCCTTCCGATTAACCGTGTATCAATATAG 1519690 24 100.0 42 ........................ AATTATACTACCCAGTTAGCCTTGCTATAAGTGGGATTGGTG 1519624 24 100.0 39 ........................ AAAAAACATTGTTTTTCTGTTCTAGAATTTCTGAAAAAT 1519561 24 100.0 40 ........................ ACATTTCTTAAACCTCCTCTAAGGCCGAATAAAGCGACTG 1519497 24 100.0 37 ........................ TCTGTCATCCTCTCCCTGTAGCTCCCCCCTAAAAATA 1519436 24 100.0 42 ........................ TCTCCGCATCCCCTAGGCGGGACAAGCAAGATTCCACGTCCT 1519370 24 100.0 37 ........................ CCTTGAAAATCGAATTGAACATTTCTTTCCTCTTCTG 1519309 24 100.0 37 ........................ TCGCTTTTCCTAACCCTAAACTCCTCCATGTCTGAAA 1519248 24 100.0 41 ........................ TCTAAATCACCCTCAACAATTTTAGTTGTTTAATTGCTCCG 1519183 24 100.0 40 ........................ TTAGACAGAAGTTTATTTATCAGAAGGATAACAAAAACCT 1519119 24 100.0 39 ........................ CTTATGTTCATATTTCCATTATTATACATTATTTGGACA 1519056 24 100.0 40 ........................ ACTAATGAAATTTATAAGTTGCCTGAGAATATAAAAAGTT 1518992 24 100.0 41 ........................ TCTCTTAAAGTACTCTCGTAATGCCTCTTCTAGTATAGCGT 1518927 24 100.0 38 ........................ ATAAATATTGGTACGGGGAGCTCACTTACGACAAACGC 1518865 24 100.0 40 ........................ TAACATTTATTGCCTTAGGGATGATGCCCCAGTTTTCCAA 1518801 24 100.0 37 ........................ AGAAACAAAAGAAAAAGAATTCACAATACCCGCACAA 1518740 24 100.0 40 ........................ AAAGTAGGTGAGAAAGCCAACTAATTTTTAATATTTTTTT 1518676 24 100.0 40 ........................ TTATAGTTTACTTTATCGGGCTCAATAGGGCTATAGCAAA 1518612 24 100.0 40 ........................ CAATTTGACGCCACCAAAATAGAGTTCTGGGACTTGTTAA 1518548 24 100.0 38 ........................ ATCTATAGATGCTAGACAGAGGCTTTATATATCTCTGT 1518486 24 100.0 40 ........................ CAAATCAAGGCAATCCTAAGCAATATCAATACAGTCCTCA 1518422 24 100.0 39 ........................ CAAGCTTTCACTGCAATAATACATAGCACATCCGTTACT 1518359 24 100.0 39 ........................ GGCCAATAACATACCGGCCCATAATTCGGCTCAAGTAAA 1518296 24 100.0 38 ........................ TTATTTTTAGCTTTATTATAGATTAATGAACTAACATG 1518234 24 100.0 41 ........................ TAAGGAAGAGCTGCAGAAGAGGGATGAAATGATAGCTGCGT 1518169 24 100.0 40 ........................ ACTATATTGTCAGTATTGGCTAATGTAATGAAAGGAGTAT 1518105 24 100.0 39 ........................ CAATATTTACAATAGTAAATGAGGCTAAGAAGGAGAAGT 1518042 24 100.0 41 ........................ AACCAAGCTATGGCACAGATGGTGGGAAACTTGGTTGTCCC 1517977 24 100.0 40 ........................ TTATACTTAAAACTATTTCATAATTTTTTACAAATTGTAC 1517913 24 100.0 41 ........................ AAAATAGGTACTCTGTAGAACTACTGTAAAAAAAGAAGCAA 1517848 24 100.0 40 ........................ GGCTGTCATTATCTCCTCAGGGACACTATAGCCAAACGCC 1517784 24 100.0 38 ........................ TGGTAGCTCATCCTTATTCGCTAATAGCAGTTGCTTTA 1517722 24 100.0 39 ........................ AATTTCTTAGGGTAAGCGAGAAATGGGATGTTAGAACGG 1517659 24 100.0 39 ........................ AATTGTGTTAAATAGTTATATATTTCTAGTGTTTGAACG 1517596 24 95.8 40 .........A.............. ACTTCAATTGTAATGCGGGGCCAACTGTCGTGCCGGTAGC 1517532 24 100.0 39 ........................ AAGTATAAAAAGCTTTTGGTAATACTTTTCCTTGGTAGT 1517469 24 100.0 40 ........................ TCTCATGTGCAAATAACCAAACGATACTTACACTTGCAGC 1517405 24 100.0 37 ........................ TATAAGTGTTTGACGGATTACTACCTATCTCTGTACC 1517344 24 100.0 33 ........................ ATAGACAGAGTAGTAGTAGTGGGGATACTAACA 1517287 24 100.0 40 ........................ TCGTTACTCTTATCTCCTTGTTATGGGGTTTCTTTTTCTC 1517223 24 100.0 39 ........................ GTTGTTCCACCGGTAGATAATGTAGCCGCGTCCCATCTT 1517160 24 100.0 39 ........................ CAAGCTTTCACTGCAATAATACATAGCACATCCGTTACT 1517097 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 57 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTACGGGGGGAATGTGGTAGTTCCACCCCCGCAGCTCCTCCTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTCCGTAACTGTCTAACTATCTGCGACCTCATAATATAATAGTGTGTGGTAAATCTAAAAACCGTTTTAATGAGGTAGAGGAAAAAGTTCCCAGGTTTACTAGGGAAAGCCCTTAAAACTATGGTAAAATCTCTACATAAAGATTAATCGTGGAAAAAGGGAAAAAGGGTAATCTATCGTTGAGGAAAGTATATAGTAGTTTTGTATTTTTTGTCCCGTTTTTGTAAGCGAGTTTCCTTGATCGTAGTTCTCTTAGGAGGCAGGGCGTCAGCCTAAATTCATTATCTGCATAAAGAAATCCTCATCTTCCCAGATTTAGTAGGGATTGCAGAATTCGAATGAAAAATTGTAAGCCTAGAGGAAAGTAAAGCTTATAAATAGAGAAGAAAAAATAATATTGTAGTAAAGGATTAATAAAGCATCA # Right flank : ATATCCCAATTCATTATCCTTGTAGGTATAGCTGATTTCAATGATGACAATTCTTCCAGAATAGGCCAATTTAATAAATCATTCCAGTAGTCAGAATATTTATATATCATCCAGACTAATTATATATAATGGAGACTAAAGTAAAGGTGGGAAAGAAGTTAACAATTTACATACCTAAGGGGATTGCTGAAGAACTTAACATTAAAGAGGGCGATATATTAACTCTAAAGGCTAAGGATAATGAGATAATTTTAGAGGTTAATAACCCAGTGGCCGATTCAGGTTTCCATAGTGGATTGTAATTATGGCAAAAATAGATTAACAAAGGAAATTGTTAAGCGTGAATCCTTACCAGTCCATGGGAGAGTGTTCAATTAAATTCATTTTATTTCAATAAATAAATTGAATTCGTAAAGGAGACGTGAATCGCCCTAACCCAGTTTTGTTATCAATAAAAGGTAAGAAGTTCACTAAAATTTCTCCAGATGAGGTAGAAAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1525113-1530612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077713.1 Saccharolobus shibatae strain S38A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1525113 24 100.0 39 ........................ TCTGATACCATTAATATTATAGTAAATGGGACTACATGT 1525176 24 100.0 43 ........................ TGAAAATAAAAAACTTTACGGTTATTAAGCGATAACATATAAA 1525243 24 100.0 39 ........................ GGCATATGGCGCTTCTTGATACAATATTTGATATACTTT 1525306 24 100.0 42 ........................ TTAAGTTCTTCGGCAGAGTTTAGGAGTGAGGGCTATGGCTAC 1525372 24 100.0 42 ........................ AAACGGGAATTGGCTTAATCTTATGCGTCTTAACAAAATGAT 1525438 24 100.0 38 ........................ TTAAGTTCACCGCCCTGAAGTTAAACATTTATATAAAA 1525500 24 100.0 40 ........................ ATGACCCTAAGCAAATATTCACAGCGTCATACATTAAGGG 1525564 24 100.0 39 ........................ CTTACAAAGGCTTCTAGACCATTTAGTTCAAAACTTCCA 1525627 24 100.0 43 ........................ TTCTTTTATTCTATGTGGAGATGGGGAAAAATAGAGTTTTCAT 1525694 24 100.0 41 ........................ TAAGGTACCGTGCTGGAGAGAGAGTCGAAGAGGAGTGAAGT 1525759 24 100.0 40 ........................ AACAGTAACTACATAGCTAATTACATTAAGCTACTTGCTT 1525823 24 100.0 40 ........................ CGTTTGTTGCTGCCATTTATATCATCTTACTTAGGTACTC 1525887 24 100.0 36 ........................ TCCTGAGTGGTCTCTAATATTTTGAAGCCTTGTTCC 1525947 24 100.0 39 ........................ AAATTTGTACCAGAAAAACTTCCTAAGGATTCTACAACA 1526010 24 100.0 38 ........................ TTTTCAACAAATTCATCCAAAATTTCTGTTGTGAATCC 1526072 24 100.0 41 ........................ TTAATTATAACTTTTAGTGAAGGTTAAAAAAGTTAACACAT 1526137 24 100.0 41 ........................ TGCCGGTTTCCACACTCCACTTCTCGCTTATCCTAAGAAAT 1526202 24 100.0 40 ........................ AATTACGGATGGGGCGGATATGGTGCAAACGCTGGTGCAT 1526266 24 100.0 40 ........................ ATAACGCTTTACAACCCTTCGAACTATCTAATTAAGATAG 1526330 24 100.0 40 ........................ ATCGCTCAAAATATTGCAGACAAATATTTGGCGCATCAGT 1526394 24 100.0 39 ........................ TACGAACTTGTGGATGTAGATTGGTACGGCGTTACATAC 1526457 24 100.0 44 ........................ ACACTGAATATTATAGGCAATGAAGATACGTATGCGGGTGGGGT 1526525 24 100.0 39 ........................ TCCAAGGTGTAGAAAGCCTACTAGGTTATTTGTTACAAT 1526588 24 100.0 41 ........................ AAAAGTAGTTATTGAATTCATTCCTTGGTTCTTTTTTACTA 1526653 24 100.0 43 ........................ GGTATAGCTTTTCTTTCAGATTTCTGGCAAAACTCTACATCTT 1526720 24 100.0 39 ........................ TTTGAAGCAATAAGAAGCCCGCATAAGCACCTCCAGTAG 1526783 24 100.0 40 ........................ ACTCATTACGGGATGAGGAGCCACGAACTTGTAGAGGATT 1526847 24 95.8 38 .......A................ ATGTTACGTTATATTGAATTTGATGGTACTTACGAAAT 1526909 24 95.8 38 .......A................ TTAGCTATAGGCTGGTGGTTAGGATCGACGTTCGGTGT 1526971 24 100.0 40 ........................ GTTATTTTATTCATTTTGAAGAGATTGAAGACTTAGCAAA 1527035 24 100.0 40 ........................ TTAAACGTACCGCCAATTGGAAAAGTCGGTGCTATATTCC 1527099 24 100.0 40 ........................ TATGAGGTTAGCAGCAGCTAGGTTCGAGTTGAAGGAAGCA 1527163 24 100.0 39 ........................ TCTACATCTTGGACATTGATATAAGCATGCTCCCGTTTG 1527226 24 100.0 40 ........................ TTCGTTGAAAAGACCACATAAGCAGTTTGTGTTGTATTAT 1527290 24 100.0 40 ........................ GAAATTATGTTGAAGAAAAATCCATATCCAGTTGCCTGAA 1527354 24 100.0 39 ........................ TACAGTTTTGACTTATACGTAGAATTAGCTGAGCATAGT 1527417 24 100.0 40 ........................ TTTTGTTCAATCTTCATTATCAATTTTTTCAGATTTTCTA 1527481 24 100.0 39 ........................ TAAGTGACTGAAGCTTATCATTAATTGACTCAAGGATCT 1527544 24 100.0 36 ........................ CTTTATGTCTGTCAGGTCAAGGGGAACTCCTCTCAT 1527604 24 100.0 39 ........................ CTTTCAATATAGAATTCTATTACCTTTTCTAAGGGGCCT 1527667 24 100.0 40 ........................ AATTCTTTCCCATAAATCCACAAACTGGACATATTGTTAA 1527731 24 100.0 40 ........................ ACTGGTACGGCGTTACATACGCTTTGCTAAACATTAGCGT 1527795 24 100.0 38 ........................ ATGTTGGTCGCTTCAGCCCTTCTTAGCTTTGGTCTCTG 1527857 24 100.0 40 ........................ GCACACCACCCGGTGCAAATACTGCGCTAACGGGAACTGC 1527921 24 100.0 38 ........................ TTTACCCATATTTTAACGTCCTTTAACGATTCAACTAT 1527983 24 100.0 40 ........................ AACCCTATCGCTAATGCTTCCTTATGTTGTAATAGGTCAT 1528047 24 100.0 39 ........................ TATAGGATTAGAGCGGATCTAAAAAGGTATGCTGCGGGG 1528110 24 100.0 35 ........................ ACATAGTTTCCGTCTTCATCATAGGCAAAAAGCGT 1528169 24 100.0 39 ........................ TGTATAAATTGAATAATAGCCTTCTCCAGAACGGTGCGG 1528232 24 100.0 36 ........................ TCTTTGATTCATAAACCGTTACGGTACAGTTAGTGA 1528292 24 100.0 40 ........................ AAAGTCTTATGCCACCAAATACGTTTTGAAATGGATCTTG 1528356 24 100.0 38 ........................ AATTCCCCTCACTTAATATTTCTATTCTGTTAATGTAG 1528418 24 100.0 39 ........................ GCGATAGAACCTAACCGTTTAGGAAAGTTTGATACATTG 1528481 24 100.0 40 ........................ ATTTTTCCTTAATAATATTCTAATAGATTTGAAGGTACCT 1528545 24 100.0 40 ........................ TTAGAAATATGCAGTCACAGACCCAAATGTACCGGGAGGG 1528609 24 100.0 38 ........................ TTTGCTTTTATGTTCATTCAACCACCTAACAAACACTG 1528671 24 100.0 40 ........................ GTTTATGGACGACACTTTGACCTCCTCATATCTTATGTTA 1528735 24 100.0 40 ........................ GAAATTACAAACAAAATAAGTAAATTAACTAAAGATCTTG 1528799 24 100.0 42 ........................ TAATGAAATAGTGTGTTATTTATGTTTCTTCATGAAGGAATC 1528865 24 100.0 39 ........................ AACGCCTCTGAATCAGATATCGAGACATTTGTAGATAAC 1528928 24 100.0 40 ........................ GATACAATAATTTGAGAATTGCTCTGAAGAACCGGTACTA 1528992 24 100.0 43 ........................ AAGACATTGGTAGGTATAATACTACATAAAATTAAGTTTCCAT 1529059 24 100.0 40 ........................ ATTACTATCTCATTGTAAACCTGAAACTGCCCCGTATAGC 1529123 24 100.0 43 ........................ CTACCTCCGTTGCCAACGGTACTTCCATTGCTGCCACCACTAC 1529190 24 100.0 40 ........................ TTATAGAACTAATACCTAAATATTCTAGATTATTTTACGA 1529254 24 100.0 40 ........................ AATAATAATAGTCCTGTTGAATACAGAAGACCTCTTTCAT 1529318 24 100.0 38 ........................ TCTCTAGAGAACTCAAGATGAAGTGGAGGATCATACTC 1529380 24 100.0 40 ........................ ATGATGATAAGCACGAGGGCAGTAATCCCGCTTACAATTC 1529444 24 100.0 40 ........................ CTTATTTGACAGAAAGGTGGTGTTGTTTTGGTTCCAGTAA 1529508 24 100.0 38 ........................ ATTAATTACATTGAATTTTTGAGAAGTAAAGGAATTAA 1529570 24 100.0 38 ........................ AATCTGAACCTTACAACTCTCACTGTTTCCTCTCTCAT 1529632 24 100.0 44 ........................ GAAATAGCATTAAACAAATCGGTAGCGATACTGTTACTAAATCT 1529700 24 100.0 39 ........................ TATATTCACGAGCCGCATTCTCTAACGCTTGTTTAATCT 1529763 24 100.0 39 ........................ ATAACCGGCCTCAAGTAATACCCTAAGAAAATAAGGTGC 1529826 24 100.0 41 ........................ ATAATAATAACAAGGTAGGGAAAGTATCAGAGTCGTTAACT 1529891 24 100.0 37 ........................ TTTCTACAGCTTAAGTAGAACTTTATCGCTTCCCTGA 1529952 24 100.0 41 ........................ TCTTCAATCTCGTCAGAAACTATGATTTCACCATTGCTCTG 1530017 24 100.0 39 ........................ ATTTAAAAATCTTTTGTTTTGCGGAATGCGTAATAAGAT 1530080 24 100.0 38 ........................ GTAAAAGCACTCCCTTGCCCCATTGTAAAACTTGCTTC 1530142 24 100.0 41 ........................ TTCCTTGATGATGTAACCTCTAGCCACTGCTTCAGCGATTA 1530207 24 100.0 40 ........................ AGCTGGTTATCTTTCGTAAACTCCCCAGTTTACTCAACTC 1530271 24 100.0 39 ........................ ATATTATACGGTGCGGGAATAGGAGGAGGGCTAGCACTA 1530334 24 100.0 40 ........................ ATAGCGGGTCTGTTCATTTCATCACCGTATCGTTTAGTGT 1530398 24 100.0 40 ........................ AATTATAAATCAGGATACTTAGAAACAATTTACGAATTAT 1530462 24 100.0 40 ........................ ACTACACTAATGCTAACAATATCCCAAATGTCAATGATAC 1530526 24 100.0 39 ........................ CTTGCCATCCCTGCGAGTGCCGTTAAGCCTCCAGCCTGA 1530589 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 87 24 99.9 40 GTTAATCTACTATAGAATTGAAAG # Left flank : TATTTCGTAGACCCTCGGAAACGGATAGTTTAACCTTGAAGTTTGAGCCCTTAAACTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAATAATTACGAGATTATCTTCTTTTTGTGCCGAAGTTTCATTTAGAAGTCTCAGCAGAAAAGTTTCATTAAATCCCATGGTGACAAAATATGACTTCATACCATAGAATTGGTATTACCACCTCATAAACCTTTCTATAACTTAAGAGCTAGTTGTTGAGGTAGGTATTTTGTAGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGTTGTTTCTTTTAGGTTTTGAGGAGGGGAGGTAGGATGTTGTCCTTAAATGATTACCTTTATGAAGAATATCTTGTTGTCCCGGGTTTAGTAGGGAGTGTGAAAACTAGTAGAAAAATTGAAGATGTGAGAATGAAGTAAAGTTTATAAGTAAAGAAGAGAAAATAAGAGTGTAAATAGAGACTAATAAATCCTCA # Right flank : GTAATAATGGGTATGACGAGAACTGGTAAGACAACTATTTTAAGGCTACTATATGACGTTACTTATTATGCTAAAAATGGAGTAGTACCAGCAGAATTGCTAAGCATAATTAATGTTTTTGATACTTCCTCTGCTGAAATTACGCTAGATAACTTTACAGTAACTTGCACAAAAGAGGAAGAGGCTTCTTGCAAGTCAGAAGATCGTGTTAGAAGAAATGAGGCGGTGTTCTCAAACAGTCATGAAATTCGAAAAGAGTTTGTAAAGTTATATTAGGTTTACTCTAATATTCTCTACCCCCTTTTAAATAGGCATCATTCAAGGGAGTCCTATCCCTTGAAAATACGTGGGGTAAATGACGTTCAACAAGGAAAGATTATACTCAACCATCCTACCACTCCCATTAACAGCCCTAGTATGCCTAGCTAGATGAGCTCTACAGTAAGAATTATAACTCTCCACAGTATTAAGTATACTCCTTACCTACAACGTGGTTATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //