Array 1 87009-88135 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXQ01000056.1 Escherichia coli strain A101 NODE_14_length_105872_cov_93.1664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87009 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 87070 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 87131 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 87192 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 87253 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 87314 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 87375 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 87436 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 87497 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 87558 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 87619 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 87680 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 87741 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 87802 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 87863 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 87924 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 87985 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 88046 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 88107 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8428-9676 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXQ01000078.1 Escherichia coli strain A101 NODE_51_length_27614_cov_128.793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8428 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 8489 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 8550 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 8611 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 8672 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 8733 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 8794 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 8855 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 8916 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 8977 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 9038 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 9099 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9160 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9221 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9282 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9343 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 9404 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 9465 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 9526 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 9587 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 9648 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //