Array 1 110580-108048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLF01000002.1 Salmonella enterica strain BCW_5087 NODE_2_length_566500_cov_4.56146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110579 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 110518 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 110457 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 110396 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 110335 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 110274 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 110213 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 110152 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 110091 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 110030 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 109969 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 109908 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 109847 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 109786 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 109725 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 109664 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 109603 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 109542 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 109481 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 109420 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 109359 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 109298 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 109237 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 109176 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 109115 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 109054 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 108993 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 108932 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108871 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 108810 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 108749 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 108688 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 108627 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 108566 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108505 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 108444 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108383 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108322 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108261 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 108200 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 108138 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108077 29 96.6 0 ............T................ | A [108050] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128512-127203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLF01000002.1 Salmonella enterica strain BCW_5087 NODE_2_length_566500_cov_4.56146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128511 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 128450 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 128389 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 128328 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 128267 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 128206 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 128145 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 128084 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 128023 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 127962 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 127901 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 127840 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 127779 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 127718 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 127657 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 127596 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 127535 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 127474 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 127413 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 127352 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 127291 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 127230 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //