Array 1 198141-198685 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCB01000045.1 Nocardia salmonicida NBRC 100376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 198141 28 100.0 33 ............................ GCGATCCTGCATGCCGCGCTTACCGCGGGAAAG 198202 28 100.0 33 ............................ GGTGAAGCCGCACGCGCTCAAGTCTTACCGATC 198263 28 96.4 33 ................T........... GTGCCAGCATGGAGGGAAGCCACCACGTCAGCG 198324 28 100.0 33 ............................ CTTCAACCGGGCCAACGGCGCACCGGCGAACGG G [198345] 198386 28 100.0 71 ............................ GTCTGATGAGCACAGTTCGTGATCTCCGAGCGGGTCGGCCCCGCACCTGGGGTTGGTCGCTGATCGCCAAG 198485 28 78.6 83 ........G..G....TAA.......T. GGCTGGGAGCGAGGCACCGACCAGTTAGGAGCAGTCAGCCCGTACCTGCGGGATTGTCCTGCGTAAGGCTCCGAACGGGATTC 198596 27 85.7 33 ...........C.CG..-.......... GTGCCTATTTTGTGATGTACGGGCTTCGTGGTC T,G [198603,198605] 198658 27 75.0 0 ..........AGGA........-..A.G | T [198663] ========== ====== ====== ====== ============================ =================================================================================== ================== 8 28 92.0 46 GTCGGCCCCGCACTTGCGGGGATGGTCC # Left flank : AGCTGGTCGGCGCTGGGACGGTGATCCGGCATACCGGTGCCAGTCTGCCCGCACCCGCGGGAGTCGTCGTGTGGCGAATCGCCACGCCTTGCATCGAGTATCGGCCGAGTGCGAGGTAGTTCAGTTTCCACTCGAGGTTGGTGGCTGTGCAGCTCACTGTCTAAGTGATGCGAAACCTATGTGCGCGAGCGCACTCGAACCCTTCAGATGTACGAATCTGACGCGGAGGCCACAAATCTGGGCGCAGGAGGGGACTCGAGCACAAATAGTGGATCAGAATTCAACAAATCTGTGATCGAGTGCGTTCGAATACAAATCGCAGGATCACCGACGGCAGACTAACATGCCGAAATCTTCGCTGCCGCAGCCGATTGTACGCTGCGATCTGTTCGGCGTTGGCTAGGTTGTGGGGACGCGGGATTTGTGTGGCACGCTTGTGGCGTGGATTCGAAGTGAATGAAATCGGGCTGGGTTGCTCGGAAACCTGCAGGTGAAAAAGT # Right flank : GGCCGACTATCGCTCGAAGGGGTACTGCGTCATGAGCTCTAAAAGCTGTAGTAGCGTGGCGGCCTGCAGGTCGAGGCTCGGTGGCTCTTCTGTCTCCAAAAGGCGTTGTGCGTAACGGAATTTGCCGCGTAAACGGTGTGCACGGGGTGAAGCTCTGCAGAGGTGAAAACGCTGCTGTCACTGCGTCAACCGTCGCGGTGACGCTAGGGTGGGGATCCCAGTGCGATGTCGATCCGCAAGCGCTTCTCCTGGCCGAGAACGGAAAGATCCGGACGAACGACGATTTCGTGTTCTACAACGCGGCCCACCACCCGTCAGGTGCGGTCTCGCTGACCGAATCTGGCTCTGGCCGTGCCGTTCTCACGGTCTCGCTTGCCAGTGTTGAAACAGCGGTTTCCCGCATCGTCGTCTCGGCATCTGTTGACGAGGGATCGTTCCGCGACGTCCGGGACCTCACGCTGACGGTCCAGGACGGGATCGACGCACTGATCTCGTTCGAG # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.96, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACTTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200601-201542 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDCB01000045.1 Nocardia salmonicida NBRC 100376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 200601 28 96.4 33 .............C.............. GTGGACCGGATCAACAACCAGAACACGGTGCCA 200662 28 100.0 33 ............................ TCCGGCGTCGACGCCGCAGCAGTGGGCCGAGCA 200723 28 100.0 33 ............................ GCCGCGGGACGTATCGCTGGACAAGTTCGGAAA 200784 28 100.0 33 ............................ GGTGACCGGGTTCATCGCGCGCAACCTGTCATC 200845 28 100.0 33 ............................ TTGAACACACAGAACTGGGTCCGTCGGGTGTGC 200906 28 100.0 33 ............................ GGGCGTCATCGCCACCATTCGCCGCCACCTCAC 200967 28 96.4 33 ..T......................... TGGCCCGGCCACGCACCCGTCATCCACCAGATC 201028 28 96.4 33 .......T.................... GAGGAGGAGACGTGCCACCCCGGACGATCTGGA 201089 28 92.9 33 ........T....T.............. GTGGACCAAGGGCGGCGGCGGCCGGGGCGCGCA 201150 28 92.9 33 .......T.....T.............. GAAGACGTATCGACCGATCCCGGGGTCGCAGTG G [201167] 201212 28 92.9 33 .......T.....T.............. GTGGAGTACTCGCTGGAAGATGTCCCGGCAACG 201273 28 92.9 33 .............C...A.......... GTACCGCGCCTTCGACGGCCGGATTGTCGGCAG 201334 28 82.1 93 .......A.....TT.....T.....T. GATCACCACGACCGTCGACATCGACGGGCATCTGTCTGCCCGTACCTCCAGGGGTTGTCCTGCGTAGAGGACACAGCTCTACACGCTGGCAGC 201455 28 89.3 33 .......T.....CT............. GCTGTCGGCGAACCTGGCGTCCGCCATCATGTC 201516 27 92.9 0 .............T...-.......... | ========== ====== ====== ====== ============================ ============================================================================================= ================== 15 28 95.0 37 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : CTGGTACCGAGCTGCCGTGGTCGAAAATCGTCTCGATCACGAGTGAGTACGGGAACGTCATCGTTTCCGCGACTACCGCCCGAGGTGGTGGAACCTATGGCGTCCCCGATCCCGAATACGTTGCAGCGGTGTTGGAAGGAGCGCTGCGGATCGCGAAGCGACTGGTTCTCGCTCCTGGACAACGTGATACCCGATCGATACCGCCGGACGTGAAATCCGAGGTGTGGCAACGAGATGGCGGTCGGTGTTGCCAATGCGGTGATGCCCACTACCTCGAATTCGATCATGTCATCCCGTTGAGTCGAGGTGGCGCTACGAGCGTCGGAAACCTCCAAATCTTGTGCCGCCGGTGCAATCTCGAGAAGGGTGCACGGATCTGACCGGATCTGGCATTCGTCGGCATGGAGTGCTAGCTTCCGTTTTCCCTTCGCCAATCGGTGGGTAGAAACGAAGTGAATCAAATCAGGGTAGGTTGCTCGGAAACCTGCAGGTGAAGAAGT # Right flank : CATACGCTGCGAAAGTCTCCAAGCGAGCCCCTCGTCGGCCCCCACCCGCGCCACCGTTCGGCCGCAGGCGCGCTTGGTACAGACATCCCGTGCGGTGCAGGGTTCTTCGGAAAATTCGACAGTACGGAGATAAGTCGGTGGATGACGACGAACTATTGACGACGTCGCTCGACCTGGAGACCCTTGATACGGCCCAGGCATAAACCGTGAAAGTTTCGCCGGGAAGACAGGGCTCACAGGCTCGGAGGTTCTTGGAGTCCGCCGGGCTGGCGGAATTGCCCGCTAGTCCCTGCGCTGAGGATTCCTTGGAGTTGCGCCAGCTCGATGTGTACTGCGCTCGCGTGTTTCCGGACATGACCAACTAGATGGCACGAATCACACTGCGGCGGTGACGAACTGATTCAGGAGCTTGATTCTGGTTATGACGAGAGTCGGTGGACGACCGGTGATGAGAGCAGCGCTGAAGAATACTCGCCCGCGGTGGGAGGCGCTATTGGATG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.34, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //