Array 1 258400-255501 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCH01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 08-0005 NODE_1_length_725734_cov_3.49748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 258399 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 258338 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 258277 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 258216 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 258155 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 258094 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 258033 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 257972 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 257911 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 257850 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 257789 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 257728 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 257667 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 257606 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 257545 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 257484 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 257423 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 257362 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 257301 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 257240 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 257179 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 257118 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 257057 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 256996 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 256935 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 256874 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 256813 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 256752 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 256691 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 256630 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 256569 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 256508 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 256447 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 256385 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 256324 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 256263 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 256202 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 256141 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 256080 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 256019 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 255958 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 255896 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 255835 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 255774 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 255713 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 255652 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 255591 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 255530 29 100.0 0 ............................. | A [255503] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276937-274957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCH01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 08-0005 NODE_1_length_725734_cov_3.49748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 276936 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 276875 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 276814 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 276753 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 276692 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 276631 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 276570 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 276509 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 276448 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 276387 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 276326 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 276265 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 276204 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 276143 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 276082 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 276021 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 275960 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 275899 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 275838 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 275777 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 275716 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 275655 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 275594 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 275533 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 275472 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 275411 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 275350 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 275289 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 275228 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 275167 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 275106 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 275045 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 274984 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //