Array 1 369555-370680 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPM01000002.1 Salmonella enterica subsp. enterica serovar Singapore strain 2350 NODE_2_length_416307_cov_19.6353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 369555 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTAACCGG 369616 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 369677 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 369738 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 369799 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 369860 29 100.0 32 ............................. ACGTTATGGTTATCCATGAGGTTGCACGCGAG 369921 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 369982 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 370043 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 370104 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 370165 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 370226 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 370287 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 370348 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 370409 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 370470 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 370532 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 370592 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 370653 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 386963-389190 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPM01000002.1 Salmonella enterica subsp. enterica serovar Singapore strain 2350 NODE_2_length_416307_cov_19.6353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 386963 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 387024 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 387085 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 387146 29 100.0 32 ............................. AAATTGCTCGAAACCGTCGCCTATTGGGAAAT 387207 29 100.0 32 ............................. CAAAACGGAGACGCTCCATAAGGGCGCTAACA 387268 29 100.0 32 ............................. AAAAATATTTACAGATTGATAAAAATCTCTCT 387329 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 387390 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 387451 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 387512 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 387573 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 387634 29 96.6 32 ............T................ GACGCTTCACCTGCATCAAATTCTCCTCCAGT 387695 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 387756 29 96.6 32 ............T................ GACGCTTCACCTGCATCAAATTCTCCTCCAGT 387817 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 387878 29 96.6 32 ............T................ GACGCTTCACCTGCATCAAATTCTCCTCCAGT 387939 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 388000 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 388062 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 388123 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 388184 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 388245 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 388306 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 388367 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 388428 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 388489 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 388550 29 96.6 32 ............T................ TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 388611 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 388672 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 388734 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 388795 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 388856 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 388917 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 388978 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 389039 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 389100 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 389161 29 93.1 0 A..............A............. | A [389187] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //