Array 1 5574-7123 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJV01000096.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 98se NODE_35_length_54601_cov_26.547960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5574 29 100.0 32 ............................. CCGGTTAATTTGTTGTAGCCGTCGCGGGGCGG 5635 29 100.0 32 ............................. CCCGTGTGCCCTTTCCCCTTGCCGTAGTCCAA 5696 29 100.0 30 ............................. ACGGTACACACCATCCTCGTTGATGATGGT 5755 29 93.1 32 CA........................... GCCCCGATAGCGTCAACTATCAGGGCCTGCAA 5816 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCAGTGTACCC 5877 29 96.6 32 ............................T ATACGGTGCCGCCTTGCTGTGAATCCACGGGC 5938 29 100.0 32 ............................. TTTATACCGCCCTCGCCGTCTGCCGGAATATT 5999 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCACCT 6060 29 100.0 32 ............................. TGACAACGGTGACAATAAAACAATCGCCAGTA 6121 29 100.0 32 ............................. GTTCTGTGTTCGTCTACGATTCAGAAAAATGG 6182 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTCCCATAAATCTG 6243 29 100.0 32 ............................. TGATCGTGATGAGTTGCCATGCGCGCAGGTTA 6304 29 100.0 32 ............................. CGTCCAGTACCCGTCCTCGTCGCGTTCTACAA 6365 29 100.0 32 ............................. GCACTCCAGCGCCACGGAATACAGGTCGGCCA 6426 29 100.0 32 ............................. AAAAAACCAATAGCACACGTAGCATTAGTAAA 6487 29 100.0 32 ............................. TAGCCAACGACTGATAGATGATCTCATAGAAA 6548 29 100.0 32 ............................. TGAGGGGGTTATGACAACCACCATAGTGATAG 6609 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 6670 29 100.0 32 ............................. CGCGAACGCGCGCAGCAGCTGCCGCAGGCTGT 6731 29 100.0 32 ............................. GTCGCGTGAATCCGGCTAATCTGGATGATCCG 6792 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 6853 29 96.6 31 ...........................T. AAAAAATGCGATCGGTACTCAACCCGGCCAC 6913 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 6974 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 7035 29 96.6 32 ...........................A. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 7096 28 86.2 0 ...............A.AA....-..... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTTTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23246-24983 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJV01000096.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 98se NODE_35_length_54601_cov_26.547960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23246 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 23307 29 100.0 32 ............................. GTCGATACAAACACAGGGTGTTTTAAAATTTG 23368 29 100.0 32 ............................. CTTGCAAAACTTCGAGAAGGGGACGTGGTTTT 23429 29 100.0 32 ............................. CTACTGCAGGGATGTTGGGATGTACGGAAAAA 23490 29 100.0 32 ............................. CCGTTGATTAATTTCTCAGTGTTGATGGAGGA 23551 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACGCC 23612 29 100.0 32 ............................. AGGATTTATCGATATCTGCCAGCGGCGCAAAA 23673 29 100.0 32 ............................. GGGCTGCACCAGTTCCTGCGCGATAAAACGGA 23734 29 100.0 32 ............................. CTCGTCCTTTTTGATTGAGTTCTCGTCATATC 23795 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 23856 29 100.0 32 ............................. AAAAGCTTCGACAAATCCAGCTAAAACACTAC 23917 29 100.0 32 ............................. TAGAATGTGCAACTACGCAAAATAGAAATGAC 23978 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT 24039 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA 24100 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 24161 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA 24222 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA 24283 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC 24344 29 100.0 32 ............................. CGTCCTGGTACGTCGGCGTGAACCCTGCCGCA 24405 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG 24466 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 24527 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 24588 29 100.0 32 ............................. TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 24649 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 24710 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24771 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 24832 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA 24893 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24954 29 96.6 0 A............................ | A [24980] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //