Array 1 2064-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCX01000003.1 Streptomyces sp. NRRL F-4711 P348contig100.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================== ================== 2063 28 92.9 33 .C.C........................ GCATGCATGTTGATCTTCTACTTTCGCAAGTGA 2002 28 85.7 33 ...C....T.....T.........C... GACCAACGGGTTCCTGGCGGACCTCTGGATTGA 1941 28 96.4 33 ...C........................ GACCGCGCGGTGGGCCGCCCTGGTGATGCGCTT 1880 28 92.9 33 ...C....T................... GGTGCTGTGGCTGCCGACCGTCGCGACGCTGAC 1819 27 89.3 33 ...C....A............-...... GCAGGTCGACAAGTACGTGAAGGGGACCGGCCG 1759 28 92.9 34 ...C................A....... GCGGGGCCTGACCGACATCGCCGGCGTGTGGAAG 1697 27 92.9 74 ....-...................C... GAAGGTTTGGCGCCTCAACGTCGTCGAAACGACGTTGTTCCGTTGGACGCCTGTGGCGTACAACCATCAGCCCC 1596 28 92.9 33 ...A......................T. GGCGCACGATGAGCTGCTCGCCAGTGGACTGGC 1535 27 85.7 33 A...............T.....-.C... GTCGGCATGTGCCGAACGCGAGATCTGGAACAG 1475 28 100.0 33 ............................ GTTCGCGTCCGGCGGCATCATGCCTGGGTACAC 1414 28 100.0 33 ............................ GTCGTGGGAGGCAGCGTGAACGAAGCGACGCGC T [1391] 1352 28 92.9 34 ...C....................C... CGCAGGGAGCCATTGCCGCGCATGGGATTCTGGA 1290 28 96.4 33 ..........................T. GCATGCGCAGTACGTCGAGCAGCAGATGGGCAG 1229 27 89.3 33 ........-..........A....C... GTTGTGAGTCTCGTCGACGAGGAGGTAGGCGAT 1169 28 82.1 33 ...G..TG.......T......C..... GTGGCCCGCCTCCGACAGGGTACGGACACGAGC 1108 28 75.0 32 ...C..G..T......GA..A......A TTCCTGGTGGACACCAGCGACCCGGACAACGA C [1081] 1047 28 92.9 33 ...C....T................... GTTCGACGAGCCGACCGCCAGCACTGTGACGCT 986 27 92.9 33 .C...................-...... GCCGCGGCTCGGCCGACCGGTGGCCTTGTCGAT 926 28 96.4 33 ...............A............ GATCTACCGCAACGAGGCGCTGATCCGCGCCGA 865 28 96.4 33 ....C....................... GACCCCCGGATCGGGCAGACCGAGGACCTTGCG 804 28 100.0 33 ............................ GGCGCAGCCCGCATCCGTCGAGATGCTCGCATG 743 28 92.9 33 .......T..........A......... GGAGGGCCGCCAGGGCCCGACGACTGCGGCGCA 682 28 96.4 33 ...C........................ GCCGCCACGGGGTACGAGGTGGGCGGGCGCGCC 621 28 92.9 33 T..C........................ GCCTCAACAAACTTTGGCCGATCGCGTGTTCGG 560 28 96.4 33 ........................G... CATCAACGCCACTCGGACGCAGTTACAGGACAC 499 28 85.7 33 .C.G....T.T................. GCGGTCCGTGTCCGGCTGGTAGGACACCTGCCT 438 28 92.9 33 ...C....................C... GAAGGGCGGCCTGTACTGGGCCGCGATCCACCC 377 28 96.4 33 ..............T............. GTAGGCGGGCATCACGTGGATGGTGTCGTCGCC 316 28 100.0 33 ............................ GGCTCGCACGGATGTCGGGCGGGCCTTTCGTCA 255 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ ========================================================================== ================== 30 28 92.9 34 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : ATCTTGTTGAGGGCCGACGGAGGGGTAAATGCCTCAAGTACCGCCCCGCCAACGGGTTCCCGCCGTAGAGTACTTACCGCTGCACGCCTCCCTGGGAGGTGCGCGGAACCTCATTGACTCACCGAAGCGACGGCAACGCCGAGCAGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGGCCCAGTCTGCGCTCTGGAGATGAAATGTCCCGGTTCCTGCACAAGTTCGCCCTGCGCCGCGAGGTACTCCTCGAGACCTCACGCGTAGTGATCACCGCGGTAATCCGCGCCCTGATCAGCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCTCATTCGCAGACAAACCCACTGGTTGAACACGTCTCCGCGTCACAGGGATACACCACAGGGTGAGAAACCCAGCTACCAGCGGATACCGCCGACACCGCGAACAGAGAAGCCCCCGCCACCGCAAGACCCGCCCG # Right flank : CACGGTCACCACCTGCGGGACGCTGCCGCAGCCGGCAGACGCGGGCCTCCAGCGCCGACGGATCTGCGGTCCGTCGATGCCTTCTCCATATCGCGCCTTCCTCGGCCGTTGATCGTATTGACGCCGAACAGGACCGACGACGTCTACCGGCACCGTTTCAGTGCGGCCCACGAGCTGGGCCATCTTGTCCTGCACGGCGACGCCAGCCCGGGTGACATCGCCCAGGAG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 17147-17910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCX01000003.1 Streptomyces sp. NRRL F-4711 P348contig100.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 17147 33 90.9 28 ..............................GTT TCGAGGTCCATCCACTCCATGGCATCGC 17208 33 87.9 28 A.......G....................T..T TGGCGCCGGCCGTGTTGACGCGGGTGAC 17269 33 87.9 28 ........G....................T.CT TCGCCAACGGAGAGACCTACAACTACGT 17330 33 93.9 28 .............................T.C. AGCGCTTTTCGGCGGGCGTGAGGGGCTC 17391 33 90.9 28 .............................A.AT CGGACAGGCTCAGCTCCACCTGACTCGA 17452 33 97.0 28 ................................A GCACGTCGCCGAGTACTCCGCCGCCGTC 17513 33 93.9 28 .............................AT.. TCCAGAAGATGCGCGCCAGGCAGCGGCA 17574 33 100.0 28 ................................. GGGCGCCGCGCGGCGCCGACGACGAGCA 17635 33 87.9 27 .............................ATCA AGGGGGACACCGCGGTCCGGCTGCTGC 17695 33 100.0 28 ................................. CGCCGACGACGTCCGTCCAGGTGTCGGC 17756 33 93.9 28 ...............................AA CGAGGCCAAGTTCCCGTACTCCTGGCGG 17817 33 87.9 28 ...T.........................TG.G GCGACGACCACGACGACACCGACGTCCG 17878 33 93.9 0 .............................AA.. | ========== ====== ====== ====== ================================= ============================ ================== 13 33 92.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : TCCCGCGCATCGTCCGCGACGTCCAGAGCCTTCTGACGCCGAGCTCCATGGATGCCACCGATGAAGACGAGCCACAGGAGAAGCGAGATGTCCAACTGGTCCACCTCTGGGACCCCAGGGCCGGTGCCCTTCCCGCCGGCGTCAACTATGCGGCCGGAGGTGAATGATGCCGTCCATGCTCGTGATCGCCACCATGGCCGTTCCTGACCACCTTCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTTCCCGGCATCTTCGTCGGGAGCGTCTCCGCCCGCGTCCGCGATCAACTCTGGCAATCCGTCACCGAGACAGTGGGCAACGGTGCCGCAGTCCTCGTCCACCCGCCCCCACCGAACAGGGCTACGCCATCCGAACGGCCGGCACCCGCCGCCGCGTCCCCGCCGACTTTGACGGGCTTACCCTGATCCGTATGACCGCCGCACCAAAGGTAAAGGAAATGTAAAGCCCTTCTTAAGGTGAAGGTCAGCAAGG # Right flank : CCGGCCCCGGCCTCGCTCCTCACGTGGGAGTCCTCCCCTGACGGCGGCCTTCGTAAGCGGTACTGATCCACTTCTTGTGTGGCGGTGACACAGAGTCACAGGTCGCTGCAGGGACGGCTGTTCGTGTGGTTGCAGCGTTTTCTCGACGTTCTCGAAGGCGTTCTCCCATCTGTCCTCCGTGGTGGTGGACGAGGTCAGGGGGAGTGTCCAATAGACGGCGGATCGATGATCAAGGAGACGCCTGAAATGAGCGAGACCATCACCGACCACGAGGTCGTGGAGGAGTCAGCCGTTGAGTCGGCTGCGGAGGCGGTGCAGACGAGCAGTTGATCTCGATGCTGGTCGACCGTGCCCGTTCCGACGGGCTGCAGCTGACCGGGGAGGGAGGGCTGCTGCAGCAGCTGGCCAAGCGGGTGCTGGAGTCCGCCCTGGAGGGCGAGATCACCGATCACGTCGACTATGACAAGCACGACGTGGCGGGCCGGAACAGTGGGAACTCC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 43808-43047 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCX01000059.1 Streptomyces sp. NRRL F-4711 P348contig15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43807 29 100.0 32 ............................. GACACCGGAAGACCACGAGGTGCGCGCGCTCG 43746 29 100.0 32 ............................. AGCTTCGACTGCTCGGGCCTGGTGGAGTACGT 43685 29 100.0 32 ............................. CCGGTAGGCCGGTACCGGTTCCGCGGCGAGGG 43624 29 100.0 32 ............................. GACTGGACCGGCCGCCTCTACGAGGGCGACGA 43563 29 100.0 32 ............................. CCCGTCACCCCCCGTTGGTCAAAAATCGAACC 43502 29 100.0 32 ............................. AATCAGAGCGGTGATCACGATGATGGCGAGCA 43441 29 100.0 32 ............................. ATCCGCCAGGTCATGCGCTCGTCGATGCCCGA 43380 29 100.0 32 ............................. GACCTCCCCGACCGCACGTTCCCCCAGGTCAA 43319 29 100.0 32 ............................. CACCCGCCGTCACCGTCGCGTCTCCTCGTCGT 43258 29 100.0 32 ............................. GACGTGGCCGCCGCGTCCGAGATTTTCGTCAA 43197 29 96.6 32 ......................C...... CAGCTCCGCGAGGCGTACGAGGACATCGTGCT 43136 29 96.6 32 ...........................T. ACCTTCACGCAGCCCTACGGCTCGACGGAGCT 43075 29 86.2 0 ............TG.........A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACACGCGAACGCCGGCGTGGCCTTGCCGATGTCGTGCACACCAGCGAGCCACACGGCAAGAGCACGCGCGTCCGACTCCCCTTGGGGCAACGCCCCGGCGATCAGCCGCCGCACCCCTACAGGCAACCACCGGTCCCACAACAGCCCCGCCACTGCGGCACTGTCTTCCATGTGCCGCCACAGCGGCAGCCACCCATCTGTCTCACGGTCATGCTTGGCCCAAACCGACCTGGCCGGCTCCCCAAGCCGACGCAGCAGGCAGGAACGGGCGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCCGGCTCCCCCCCACCAGAACCAGAAAAGAGACGAATCCGCTGAGAGATCGCACTTCTCAGGCATACGATGATCGGCTATCTATGGACGCCTCTACGGAACCACCCATCACCTCATGCCCTATTTGCCGGAATCTGTAAAGGTTGCCGAAACCACGCCTCTGCGGCCATAAACTTGCAGGTCAATCAGT # Right flank : CTCGTCCCCGGCCACGGTCATGCCCGTGGCCGGGACCGTCTTCCCGGGTTCCGCCCAGTCGAGCCGGAGGACCGCAAAGAAGTGTCTCCATTTGTCGTCTGCCATGAGAACGTCAGCCGCTCTGCCACCTGAAGTGTCAGTCGTACGGTGCGCCGCCTGCGGGGTTCTACGCCCCTGCTCATGACCGGACGTATCTGCCGGGGCGGGCGTGAGGGGCAGACTCACACCGCCACTCCCGAGCTCCGCTTGTACAGCTGGTCATTCGTCTGGGTGGTGATTGGCCCCCGAGCGGCTTTCGTTGCGCTGAATGGGGGACGCGCCCTCTAGCGTGCAGGCGTGACGACTTCGATCAAGCCACCTCGTGAGGCAGAGCAGCCGTTCATGTGCCCGGACGTGAGCGGGATACGCGTGGTGGTCACGGGGGCCACGGGGTTCGTGGGCCGTCGATTGTGCCGCCGGATTGTTGCGGGCGGTGGCCGGGTGACGGCGCTGGTGCGGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54054-54816 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCX01000059.1 Streptomyces sp. NRRL F-4711 P348contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54054 29 100.0 32 ............................. GCCGTCGTGCTCCATCTCCACCAGGTCGCCGT 54115 29 100.0 32 ............................. TCCAGCACTACAGCCAGCGCACCGCCCGCCGT 54176 29 100.0 32 ............................. GATCGCACCGAACGCGGTGAGGAAAGCGACGG 54237 29 100.0 32 ............................. GGCTGACCGCAGGAGGGGACATGGCCGACGAG 54298 29 100.0 32 ............................. GCGCTCGCCGACGCGCGGCACAACCTGGTGCG 54359 29 100.0 32 ............................. TCACCCATGTCGGCCCCCTCATGACTGGTCGT 54420 29 100.0 32 ............................. GACTTCTGCGGGTTCTCGGACGTGGAGGATGA 54481 29 100.0 32 ............................. TGGATCATCGACGCACCCGGCGCGGTCCTGGC 54542 29 100.0 32 ............................. GTCGTCACGCGCTCTGGCGCTCGGTGGGTGGG 54603 29 100.0 32 ............................. CTGCTGCGCGCCCTCGACGAGCTGCCGGACGA 54664 29 100.0 32 ............................. GGCGGAGGGGCGAGCCGTGGAAGTCGCCGTCC 54725 29 100.0 33 ............................. GCCCTCGGTTCGGTGGGTGCCTGGGTACAGGGC 54787 29 86.2 0 ............T....T....C..C... | G [54809] ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGAGTATTCGTCGGCAATCCCTCCACCCGCATCCGCGACGCCCTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGGATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCACCGCCGAACCAGCTCCCCGGAACGGACCACCGTCCGGCTGGAGCAGAGCCTCCAAGCGCCGACGCTTTGGCAGAGGCTGATGCACTTCGAACACTTTATGCCCTATTTGCCGGATTCAATGAAGATGCTCGAAAACCGCCTCCGGCGTCAGTAAAAGCGCAGGTCATCCAGT # Right flank : CAGGTTGGGCCCGCTCCGTGGGTCTCCGGCCAATACCACCAGCGACTACCGGCACCAACGCGGGACCCAGTCAGCGCCCTGGAGCTACTTCATGCTCTGCCCCCGGGGTTGCGTCGACTGCGGGTGTGCGACAGCAGCCTGCTGGGGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGCGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCTTTGGCGGCCTGGGCGCGGTGGCTGGCGGCGAGCTTCCGGAACTCTCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGAGGCGGCGGAGCGCATCTCCAGGAACCGCTCGGCGGCCTTGTCCGCGCGGTCGGGCACCGGCTGGCCTGCTGCACCGAGGGCTTGGGCGATCCGGTGGTCCCGGACGGTCTCCCATGCCCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 58400-57639 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCX01000059.1 Streptomyces sp. NRRL F-4711 P348contig15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58399 29 100.0 32 ............................. TGCGCTGCCGCTGCCATCCGTCCAGGCGCCAT 58338 29 100.0 32 ............................. ACCGCGACCAGGGCGAGCAGGATCGCGGCGAA 58277 29 100.0 32 ............................. GTGGTCAACAGCATCAACATGTTCGGGATCAT 58216 29 100.0 32 ............................. GAGGGCGCCACCTCGGTGCGCGTCGACCGTGC 58155 29 100.0 32 ............................. TCAGAGCGGCGGCGAACTTCCCCATATGCTGT 58094 29 100.0 32 ............................. GACGTCGCCGGGCGATCCGGCGATCCAGCCGG 58033 29 100.0 32 ............................. GAAGGAGCACGGGCCGAGTCCCGCACCATCCG 57972 29 100.0 32 ............................. ACCCAGCCGTCGGCCTCGGCCAAGGCGGTGGC 57911 29 100.0 32 ............................. TACGAGCCGTACGAGTGGGAGCGGCTGCTGAA 57850 29 96.6 32 ...............A............. TTCAGGATCTCGCCCTGGCTTCCGGCGTTGCC 57789 29 100.0 32 ............................. CAGATCACGAGCGAGCAAGCCGACCCGTTCTG 57728 29 100.0 32 ............................. TACTCGAAGACGGCGACCGTCAACCTGAAGGG 57667 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CTGGGCTCGGTGGTGGGGGCCTTGGCCTATCGGCGAGTGTTGCGGTCTCGGCCCGGCGTGTCGCACACGACGCGCCCGTGCCGGTCGGCAGGGGGCGCGGTGGCTGATCGTTCGTGGGTTGGTGGAGGTGTGGGGGAGGGGGGTAGAGGCGGGACTCGGGAACCGAGGCGGGGAGCGTCGCAGGTATGCCTGCCCTCCCAGCGAAGATCGCTGCCGAGTACAGCGTCGCTGGCGTCCGGGTGGTGCGTCCCGGGCTCGGAGCCATACTCGTCACGGGGGGCTGGCTCCAGGACTTCGGTGCGTTGTCCTGTCTGGCTTACCGGTGGCCGGTCGAAGTACGGGAGTCGTTCGGCCGCCGCCGCTTCTCTCGTGCGAGCAGATCGAGGTGGCGGTTGGCCTCCACACGTGGAAGCCGCAGTTGGCGTGTGTACTATTTGCCGGAATCTGTGAAAGTCGCCGAAACCGGGTCTCAGCGGCTGTAAAGATGCAGGTCAAAGAGT # Right flank : TGCGCCGGGCAGAAGACCGAGGCCGATCGTGGCTGCTCCCCTCCCACCCGCGATCATGCCTGCGGCCGCGGCCTGTTTGCTATGGGCGCAGTTCGGCCGAGCTGGAGCACCGCAAGGAAGTGCCCCCAATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCAAGATCAAAAATAGAGTAAGGACAAGATGCCGAGGAGTCCGTGCGCGGCCAGGCGCTGGAACGCTTCGACACCGGTACGGCGCAGCTCACCCCCGACCAGGCCGCCACCGCCATCGACGTCTTCCAGGTCGCCGCCGGGTTCGAGCTGTCCGCCGAGCAGCAGGCCGCGGTGACCCGGGTGCTCACCGCCGGGCACGGCATCGATGCCCTGGTCGGCGTCGCCGGGGCGGGCAAGTCCACGCTGATGGAGGCGTGCAGGATCGGCTGGGACGCGACCGGCACGACGCACGCCGGCGCGACCCTCGCCGCGGTCGCCGCCCAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //