Array 1 38749-40058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWP010000023.1 Pseudomonas aeruginosa strain 185819 185819_ctg_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38749 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 38810 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 38871 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 38932 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 38993 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 39054 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 39115 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 39176 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 39237 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 39298 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 39359 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 39421 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 39482 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 39543 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 39604 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 39665 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 39726 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 39787 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 39848 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 39909 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 39970 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 40031 28 79.3 0 A..........A..C..-.....A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49230-50783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWP010000023.1 Pseudomonas aeruginosa strain 185819 185819_ctg_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49230 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 49291 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 49352 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 49413 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 49474 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 49535 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 49596 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 49657 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 49718 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 49779 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 49840 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 49901 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 49962 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 50023 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 50084 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 50145 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 50206 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 50267 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 50328 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 50389 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 50450 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 50511 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 50572 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 50633 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 50694 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 50755 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //