Array 1 38424-39110 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXH01000063.1 Pseudomonas aeruginosa strain ENV-567 PA4_G3_NODE_39_length_47477_cov_35.3748_ID_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38424 28 100.0 32 ............................ ACCTGGCAGACGTTCGTTCACCTCTGGCGTAG 38484 28 100.0 32 ............................ ACCGGGCCGACGACACCACGCCGTTAGGAGAC 38544 28 100.0 32 ............................ TCGGCGTCACGCTTGAAGATGCCCCAGTTCTT 38604 28 100.0 32 ............................ ATCGGAAAAGCAGGAACCAGCGGTACGCTGCC 38664 28 100.0 32 ............................ AGACACCGCCGGCGGTGCCGAGGCCGACCAGT 38724 28 100.0 32 ............................ TCTAGGGCGCCACGGAAGCCCACATAACCCAG 38784 28 100.0 32 ............................ GGATGCAGCCTCGACCTGCTTGGCGGCCCCCT 38844 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 38904 28 100.0 32 ............................ ATGCCGAGTACGTCGAGCAGCGGAGACGCATG 38964 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39024 27 89.3 32 A....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39083 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXH01000033.1 Pseudomonas aeruginosa strain ENV-567 PA4_G3_NODE_63_length_1364_cov_39.6353_ID_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139 28 100.0 32 ............................ TTGGCGCGGATCCAGTCCGCCTCGTTGTCGAA 199 28 100.0 32 ............................ TACAGCATCAGCGAAACCGTCTGTGAGGATTG 259 28 100.0 32 ............................ AACGACGAGGCGCGTCCCTACGGCGCCATAGT 319 28 100.0 32 ............................ AAGATCATGGTGCGGCGCGCTGCTTTTTTTCC 379 28 100.0 32 ............................ AACTCGTGCTTGATCGCCTTCTGCCTGGCCTC 439 28 100.0 32 ............................ GGCACGCGAACGCCTGGTGGCCTTGAGTAGGT 499 28 100.0 32 ............................ ACCGGATAGTTCGCGCCGTTCTGTGCGTTCGC 559 28 100.0 32 ............................ TTGGTGGCCTCCGCTGTCTGCCTCATGAAGCC 619 28 100.0 32 ............................ TCGATCTCGCGCAGTTCCTTGCGGATGTGGTC 679 28 100.0 33 ............................ TGTTCTGGGGTTAGGCTGCCGGCGATCATTTCT 740 28 100.0 32 ............................ AGCACGGCATCAACTTCAGCCTGGCGATCATT 800 28 100.0 32 ............................ TTGCCGAACGGGTTGTTCTTCACGAACGCGCA 860 28 100.0 32 ............................ TGGGAGGGATGCCACTGTGACCGTCGCCCTAC 920 28 100.0 33 ............................ TGGTCGAGCCGACCGATGTAGCGCGCATCTGTT 981 28 100.0 32 ............................ ATCAGCACCCGGCGGCATGGCCCGCGCCGTGC 1041 28 100.0 32 ............................ ACACCAGCAGGGCGACGGTCACAGCGGCATCC 1101 28 100.0 32 ............................ CACCGCCCCGCCTCTACTTACAAACCGCCTTA 1161 28 100.0 32 ............................ TTTTCCGTAGCCTGCCCGGACATTGCCCTGGC 1221 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 86471-85182 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXH01000048.1 Pseudomonas aeruginosa strain ENV-567 PA4_G3_NODE_9_length_217199_cov_38.4165_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86470 28 100.0 32 ............................ GCGCACCCTGGGCACTTGTCCTCATCCGGTTC 86410 28 100.0 32 ............................ AGGTGGTTGGATAGGTTCATGTCGGCCAGCAT 86350 28 100.0 32 ............................ TCCGGCGGATCATGGCCGAGCGCAAGCTTCGC 86290 28 100.0 32 ............................ TCGAAATGATGGTTCCCTACGAGGACCTGCAG 86230 28 100.0 32 ............................ CCTTTGTGCCGTGCCATGACCATGACCAGGCC 86170 28 100.0 32 ............................ AGCAGAACAAGGAGCATTCGATAAGCCACACG 86110 28 100.0 32 ............................ GGGCAGATTCACGTCGTGTGCCCCTTCACATG 86050 28 100.0 33 ............................ CTCAAGCTGGGTCTGCCCAACCGTGGCGGAATA 85989 28 100.0 32 ............................ TTTCGCGCTGCCTGCTCAGCACGGAGCATGTC 85929 28 100.0 32 ............................ TCGTTGACCCGCTGGCGCCAGAGCATTTCGCG 85869 28 100.0 32 ............................ TGGAGCAGGTCAGCACCGCGCTGGCCGCGCAA 85809 28 100.0 32 ............................ ATGATCGGATTGCCCTTCTCGTCGCGCTCGAT 85749 28 100.0 32 ............................ ATCTCAAAATCGTCGCAGCCAGTTAGCAAACT 85689 28 100.0 32 ............................ AAGCACTCTGGTATGCGCTGGTTGCAAAGTAC 85629 28 100.0 32 ............................ ATGTCTCACCTCGCGTTCGCGTGCATGCGGCT 85569 28 100.0 32 ............................ GTCTACGGATTCGCCGGATTCGTGCCTGAGTG 85509 28 100.0 32 ............................ ATCGCCGTCAGAGCCGCCACCGCTGCCGCCAG 85449 28 100.0 32 ............................ ATTATGCGAGGCCACTTTTGGTACCGGCAGAG 85389 28 100.0 32 ............................ TATCCCTCCCTCTTTTGGCATGTGTCAAAACA 85329 28 100.0 32 ............................ CTCCCCAGCGCAGGCCGAGCAGGCAGAGGCGG 85269 28 100.0 32 ............................ AAGCAGCGCGAAGCGTTTTTGAAGCACCTGGG 85209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAAGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGGTGCCGGGCCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //