Array 1 652972-653529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 652972 30 100.0 36 .............................. AATTTTTTAGAAAATCCATTTAGAGAATACATATTA 653038 30 100.0 36 .............................. GCAGGAATATTTTCTTTTATTCTTTGTAAAATACCA 653104 30 100.0 35 .............................. TTAGGTGTTCATGCTTCTAATCCTATGCACCAATT 653169 30 100.0 37 .............................. GCCATTAATCATTACCACCTTAATATCACTATTATTG 653236 30 100.0 36 .............................. GTAAGTTCACCGCCACCTATTACAAAACCGATAACG 653302 30 100.0 35 .............................. CACTTTTTAAATATATGCAAGTGTTTTTTTTATTA 653367 30 100.0 36 .............................. CTACAATACTTTACACGACTATTATTAGTGATAAAT 653433 30 96.7 36 ...........................T.. CCTATACAATCATAATCTTCATTGGCACATACCCAT 653499 30 83.3 0 ...............A.A.....TA....A | G [653526] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 36 GATAAATATCAACAGGTGCTGTACGAAAAC # Left flank : CAACTCTAATTAAGGCTTTAAAAGATATGTAAAAATTATATAAGCGTTCATCAGAGTGAGTCTATTTTATAGATATTACAAAAGCTAGTAATTTTATAAAATGGTCATGAGGAATATTATAAAAATAGGTGATTTTGTAATAACTAAGAATATCGCCAAAGATGATGACTATTTCTGTAAAATAAAAAAAGCTGGTGCAGTCATTTAAAACTACATCAGCTTTTAAGATAATGAGATTATTTATAGTATATATCGTATCATTTTAACTTTGGTATCAATCAATGAAAAATTTAAATTAATGGTGGCTCAATATTACTATGTTAATTGATGATGCACATATTTTACCAGCTAATTTTTTATAAAATCTTAATAACTACTGTGATTACTAACTTTATAGATTTATAACCAATATTTGCCATTTGCTGGTAAATCTTTTTAAAGTCTTGCAATATTAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : AATTGAATATGTATTATTTGGAGTATGGCGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAACTAATTGATATCTTGTTATATTCATATATGGCGGTTAAAATTAACGTACTGAAAACGTACTATTATAAAAAGAACAGAAAAAAATAGAAATATTTAAATATAAAATAGCCTATATTATATAGGAAGGAAAAAGATAAAAATAAGGTGAAATTTGATTAAAAATATATGCTGAATAATTAAGAAATAAAGTCGTAGCCTTTTATTAAAAGGTTGCGGCTTTTTGTTTTACAATGATAAAATTTATTAGATATTTTATTTTACATTATTGGCGAAGTTTAAATAAAATAAATATTATTTTATCCTTATTATAATAATTTATTAAGCTATAAAGATAGAATAATCAGCATAAAAAGTTGTTTTATTAGTAAAAAACATGTAAATATGTAAACTTTTTTCTTGACTATGTAATAGATAAGTTGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 773139-773824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 773139 30 100.0 35 .............................. TGCTCTTCGGAAGTTTCTTTTAATAGCTTTTGCCA 773204 30 100.0 35 .............................. TGTAGCTGGGTTGAACGTGTTGCAGATAATGTATT 773269 30 100.0 36 .............................. TTACTTGGAGATTTAAATGGAACATCATCATAAGAA 773335 30 100.0 37 .............................. TAAAAATCTACGTGTAATTGCCACGCTAGATAATTAA 773402 30 100.0 34 .............................. TTTAACCTCCAATTCTGTTTTACGCATTAACTCA 773466 30 100.0 36 .............................. CCAGTGAAGAAAATTTCACCACCCCATGAAGATATT 773532 30 100.0 34 .............................. AAAAAGGAAAAGATGTCGTTGATAGAAAGGTTGA 773596 30 100.0 34 .............................. ATAGTCGTGAATTAAATTCTATCAAACTATAAAA 773660 30 100.0 38 .............................. TAGAAAATGACGATATACTTAATATAGACTTTTACGGA 773728 30 100.0 36 .............................. TCTGTTTTATCCTGACCGCATGGATCGTGATGAAAC 773794 30 93.3 0 ..........................T..A | A [773820] ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCAGAAGATGCTATTGAATTTTTGCTTGCAGGTGCAACAGCAGTCGCAGTGGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAACCTATAAAGCTAAGAAATATAAGCTTTATAGGTTATTTTTTTATATAACTAATAAAAATCAAAATCAGCTGGTAAAATTTTTTTATATCCTTGAATAGCAAGATTTTAGAGACTATAATAAAAAAAGAAATATTAATAAATATAGG # Right flank : AAAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTATGTTGTATTTGAGATGCAACGTATTCCACAAGAAGAAGTCACCACTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTTTCTATTAGTAAAGAAACTTTAAGAATTAATGGCGAAATCCGCGCTAGAGAAGTTCGTGTGACAGATGCTCAGGGAGAGCAGCTTGGTATTATGTCTACAAGAGATGCTCTTCGTAAAGCAGAAGAAGCTCATTTAGACTTAGTAGAAGTTGCTCCAAAAGCAAAACCACCTGTTTGCCGAATCATGGATTTCGGAAAATATCGCTATGAACAACAAAAACGTGAAAAAGAAGCGAAGAAAAAACAGAAGGTTATCAGTGTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 958819-957732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 958818 30 100.0 38 .............................. ATAAGAAAACAAGAAGATAAATATATATTAGAATTTCT 958750 30 100.0 37 .............................. TAGTTATTACCACCTTTTTTAAATATTTAGTAGCTCT 958683 30 100.0 36 .............................. AACCATTTGTGTTCTCCATCTTTATAATAAAAATGA 958617 30 100.0 37 .............................. CAGAAAGCAAAGACATAAACCAGACGCTTGCGGAAGC 958550 30 100.0 36 .............................. GCATTAAAATAAGATGTATTCATTCTTTTTTGTAAT 958484 30 100.0 35 .............................. CAAATTTTATCAGAACGCACAAAAAGGCAGTCGTT 958419 30 100.0 36 .............................. AGGGTCAGTAATCTATGACGCTATAGCGCCTTGTGT 958353 30 100.0 37 .............................. CCGCCATACAACTTGTGTTTTAACTAGCGTTATAATT 958286 30 100.0 37 .............................. AATAATATGTTTATGCCTTGACTATCATCTACCCAAT 958219 30 100.0 37 .............................. TGTAGTCTACACGTTCACGACCATAGCAATCACCCAA 958152 30 100.0 34 .............................. GTGAAAGTGGTTTATATAGCTTGGTTCTTTCTTC 958088 30 100.0 35 .............................. TTTAGAAAATCAACTATTTCTAATAAATCCACATC 958023 30 100.0 36 .............................. TGACATTGCGTCATAATAAAGCTTTCGATACCCTTA 957957 30 100.0 35 .............................. TTAAATACTTTTACAAAATTTGATTTTTCAGTGTC 957892 30 100.0 35 .............................. GACTTTTATGAAAATCAATCCTTTTCTATTATAAA 957827 30 96.7 36 ....................A......... TCCATATAATAAACTTGTATTTCACGGATAGTTCTA 957761 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.4 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : ACAAAACCGAACAGATGAAACAGACTATAGCTGATTTTCTTAATAATCGTGTTCAAAAATGACATCATATTTGACATCATGCTGACATCATGTTGTGAAATATATAGCTAAATATAATACCTTATATAACATTATTTTTCTCCGAAAAAAACACATTTTAATAATATTATGATGTCAAAGGCTTTATTTTATGTATAAAATTGTTATGCTTTAACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTGCTTAATAAAATTTTATTTATCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAATAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAGTCATAAAGATTGATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAACCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCTGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 1182227-1182071 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 1182226 26 100.0 38 .......................... GAATAAAAAATGTCTTTTGGTAGTGGAAAAAACAAGCT 1182162 26 100.0 40 .......................... GAATTAAATAAGGAAGATATTATAGATATAAATCCAGAAA 1182096 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 ATTTAACTTTAACAAATGTTGTATTT # Left flank : TTATTTATGATGCTCAAGGTACGGCACATACATCAGATTGGGAATATCAATATGCTTATTATGCAAAGGATTATGGTTTATTAATCGCAAAACAATATACTCCACGAGGAGAATATAAAGCGTCATTGAGATTCATTGATGATAAGTTTGACAGAATAGAGAGAAGTATATATTAAAAAATAAGGACTAGCCATTTAGGTTAGTCCTTATTTTTATATTCTTATGCAATTAAATGTTTATCTTTTAATACAACAATAATGTCTTTATATTGAGTTAACATATTATATACATATAGTTGTCCTTTTGAGGTCATTTACTATATAATATATAAATAATAATTTTACCAGCAAAAACAAATAAAAAACTTCTTAATCCTATAAAATTAAACATTTTCATCAAATCAAAAAAACTACATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATCTCAATATTTTTAATAGTATAATGAAAATCACATAGATTTATTTTTCTAGT # Right flank : TCCCTATAACAACAAAAAAGCCCCTATTACCTAGATTTTTTCTAAGTAATAGGGGCTTCTTTTTTAGCAATAAAAGAAAATGTTATTTAATTATAACTCTTTTATTAGATTTTATCTATAATTTTATTTACTTCTGCAATACCTTTACCATCTAGCTTATCTATTATCCCAAGATAAGCCACATTTCTAGCTACTACAGATGTGCTAGTAGTTGTAATTATTTGTTTTTGTAATTTGTCCTTAAGCTTTCGCTTTTCATCATCTAATTTAGATTTAATAAAAATCTTTGCAAATTCTTTTAATATGTTCATGCTTATTCCTCTGTTGGTGCTAATTTATTAACTACTTTTTCTACAATCCAAAGACTACCATTTATGGCTACTGGTAAGAAAATAGTATCTCTAAATTTTACCCAGCCTTTTTCATCAACCGCACTATTTTTAAGCTCTGCAACAAAAGCTGTAGCTACTTCTTTAACTGCTGGCAATGCCGTATCTTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAATGTTGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:84.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1531368-1531926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1531368 30 100.0 36 .............................. AGAGAAAGTAGTTCATGGTAGTTTATCTGATTTTAA 1531434 30 100.0 37 .............................. GAGTTATTTTTGAAGATGAGGATAATAAAGTATCCGA 1531501 30 100.0 36 .............................. CTGTATTTTCTACCAGCAAATTTAGCACCGCCATCT 1531567 30 100.0 36 .............................. TTTTTTATATATTCACCTCTGTTGTTAAATCTCCAT 1531633 30 100.0 36 .............................. ATGTATTAGATAAACTTGTTGAGAAAAATTATATTT 1531699 30 100.0 36 .............................. ATATATTGGAAATACTGTGGTCCGTACTATGTGGCA 1531765 30 100.0 36 .............................. TCTGTAGCTTTTTCCACTATAAATTTACCTTTTATC 1531831 30 100.0 36 .............................. TCTGTAGCTTTTTCCACTATAAATTTACCTTTTATC 1531897 30 83.3 0 ....................TA.A..A.G. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : GGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTTGATCAACCAATCGACAAAGCTAAAGAATTATGTCGTTTATTTATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTTAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAGCTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTATTTTATCTAAAATTTACCAACCAAAATCAAGAAAAATCTCGCTAATCCTTGATAAATAAACATTTTCACTAAATCCCTTCAAATCTCATTATTGCTGGTAAAAAATAAGTAAAATCCTTGTTTATCAACACTTTTAATAGTACAATAAAATCATAAAGATTAATTTTTCTAGC # Right flank : TAATAAAAGAAAGCCTTTAAATATAAGTATTTAAAGGCTTTCTTTTTATAAAAAATCTCTAAAAAACACATAAAACTCTTTAAAAATTAAATAGTAGTCAACAAATAGACAACATTCATCACATATTTTAGATTAAATCAATAGCTTCTTTTAATTGTTCAATAGTTTTATGTGTATAAACTTTTTCATTAATGGTTTTCCCTACATGTCCTAATATTAGATTTTTTATATTTTCTTTTACATCTGCATTATCTAGTAATGTATTACAAGTATGTCGTCCATCATGTGGAAGATGGTTTTTTATAGCTGAATTTTCTGATTTACGCCATTTATAAGCTAAAGTAGCATACGGCAATTTTTTTCTTTTTATATCACCTGTAATTAGGTATGGATTATTAAATTCATTAGCCATATCAAAAAAATATTTTATAAATGGATAAATTTTTTCTGCTATAGGAATACGTCTATTTATCCCCATACTTGTTTTTGCTCCACCAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 1683069-1684209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048627.1 Megamonas funiformis strain JCM 14723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1683069 30 100.0 36 .............................. AATATTCTCTTAGCACCACCTATAAAATCTGTTGGT 1683135 30 100.0 36 .............................. ATATTATCCCGATATCGAATAGTTATTTTACTTAAA 1683201 30 100.0 34 .............................. TCTGGTGTTTTCTTTTTCCATGTTGTATCTGATT 1683265 30 100.0 34 .............................. TATGGCATACCTAGCCAAGAATTTACGAAGTTTT 1683329 30 100.0 34 .............................. ATATGATTTTTAACTTTTTCTATTAAATCTTCAC 1683393 30 100.0 36 .............................. CCGACACCAGCACCAATATAATATTCATTTTTAAAA 1683459 30 100.0 35 .............................. AAAGTGGAGTGTTATTCAGAAAGAAATGAAATACA 1683524 30 100.0 36 .............................. TGTAATTATACATTTTTAGATTGTATAGAAAAAGCA 1683590 30 100.0 36 .............................. ATGTTATTAAAATCACAATTATTAATAATTACATTA 1683656 30 100.0 34 .............................. TCTGTTGTGTAAATAATAAAAGGATTTTGTATTG 1683720 30 100.0 36 .............................. TGACTAAGTAATACTACATCACCAACTTGACAGGCT 1683786 30 100.0 36 .............................. ACGGTGTTTTACCTAGTGCAGGGCCATTAGGTATAT 1683852 30 100.0 35 .............................. GTTATCAGATACGTATTTTCCGCACAATAGCCAGT 1683917 30 100.0 36 .............................. TGTGAACGGGCAAAACTTGTTTGTATAGCTCGTTTA 1683983 30 100.0 35 .............................. GAATAAAAACCACTTGTATTTATAGCTTTTAACAT 1684048 30 100.0 36 .............................. TTATCCTGTTCCATTTAATCACTCCCTATTAACCAA 1684114 30 100.0 36 .............................. TTCCTAGTTTCATTAGCTACTTGCTCCTCCTCTTGC 1684180 30 80.0 0 ................T......CAAA..A | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 98.9 35 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGCTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGCACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCAGCTGGTATTAATAGTGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTTTTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTATTTTCCTAATCATTTTTTAGTTTAAAACCTGAAATCCTTATAAATAAAGGATTTATAGAAAATCACCAAAAATCCTTAATCGCTGGTAAAAACTTATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTAATTTTACTGGC # Right flank : AATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTACTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAATCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATTTTCTCAATTATTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //