Array 1 371333-368787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016605.1 Bisgaardia hudsonensis strain M327/99/2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 371332 36 91.7 30 TC..A............................... CAATATAAAATCTCTTATTCAACGTTTCTA T,C [371324,371327] 371264 36 100.0 30 .................................... TATCCAAGGTTGCATATTTTAAATGAGTAT 371198 36 100.0 30 .................................... TTATTTTATAAATTAATTTAATTGCTTCGT 371132 36 100.0 30 .................................... CATTCCTGTTTTTTTAGCGTAAGCGGGAAT 371066 36 100.0 30 .................................... CTCAAATTTAGTTACTTGATTAAAATGAGC 371000 36 100.0 30 .................................... CAGAGCTGCTGCAAACAAGTGGATGACAGG 370934 36 100.0 30 .................................... TTAAAAGAGCTACAAAAAACAGTTGGTGGT 370868 36 100.0 30 .................................... AGGACGTCTTGGTAATGATGATTTACAAGA 370802 36 100.0 30 .................................... CAATATTCATTTCAACAAGTGCTTGTTGCA 370736 36 100.0 30 .................................... AACACGAGAAACATCAAACCCAGATAATAC 370670 36 100.0 30 .................................... CTTAGAGGCAATCTACCCAATTACTCATCA 370604 36 100.0 30 .................................... AGTTATCTCAATCACCATTACAAGCCGAAA 370538 36 100.0 30 .................................... ATTTTTTCTCTGAAGAGCTTGACGAAACGC 370472 36 100.0 30 .................................... AACAGGCACAGGTATTGTCAATGGTGTATG 370406 36 100.0 30 .................................... CATATTGAACAAGGATTGGCTATATTAGAA 370340 36 100.0 30 .................................... TGTTTCAATATCTCTACGAAAATTAGTAAG 370274 36 100.0 30 .................................... CCCTGTAGTAAACCCAGTATCAGAGATTGA 370208 36 100.0 30 .................................... TATATCCTATCCATCTTGCTATATTTCTAT 370142 36 100.0 30 .................................... GCGCTTGTTCGCGCAGTGGCGGTAATGGTA 370076 36 100.0 30 .................................... TGATTATATTACCAAACCATTTAATCCTCG 370010 36 100.0 30 .................................... GTCTGATATTTCAAAGCGGTTAGCTAGTTT 369944 36 100.0 30 .................................... CAGAGATTATTGAAGATGACTCAATGATAG 369878 36 100.0 30 .................................... TATTGCAGGTCAAACTGTACCAGATGATTT 369812 36 100.0 30 .................................... ACAGAAACTAAAAAATAAGGGGCATAAAAT 369746 36 100.0 30 .................................... ATTATAATACTGTTATAACAAATGGTGCTT 369680 36 100.0 30 .................................... TTGCTTGCCATTTATATGCCAAGCCCTGCC 369614 36 100.0 30 .................................... ATTTAACCCATTTTTAACGCATATATAACC 369548 36 100.0 30 .................................... TAAGACGTTTAGTTGCAGGGCAATGTGATG 369482 36 100.0 30 .................................... AATGGTAGAGCACATAGCGATCGCTTGTGG 369416 36 100.0 30 .................................... TCAATTCAAATCTCATCGCTTCCAACTTCT 369350 36 100.0 30 .................................... TGGAGAAACATTACGCTTATATGTTTCAGA 369284 36 100.0 30 .................................... TAATTCAGAAATTTCACAATTCTTGATCGT 369218 36 100.0 30 .................................... CGTGGAAAAAAGTACAAGAAGAAACTGTTA 369152 36 100.0 30 .................................... ACTTAATTTTTATGCCAATAACCAAAGATA 369086 36 100.0 30 .................................... CCTAGATACCGTAAATATCTAGGCTTTATT 369020 36 100.0 30 .................................... TGTAATATTTGAGCGGTGTCATCAGGCTTT 368954 36 100.0 30 .................................... TTACTCATAATCTCTACACAAGCCTCTTGC 368888 36 100.0 30 .................................... AAAGTAGCAGTGGAGGCACTGATAACGATA 368822 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCTGTGCTACAAT # Left flank : ATAAAACAATAAAAGTGTTAGTAGATGTTTCAGGTAAAGAAAAATTAAAACCAAAAGAAAAGCTTGATGTTGTCATTAATGCTTATAAATTATTAAATTATAAAAGTGTTCTTGCTGAAATATCAGGTGAAAATTATAAAGTATTAGAGGGTGAGCCGTAAAACAAACGGGATAGATAAACTATCCCGCTGTTAAATTCGTGGTAGGGGTTGAACCTACAGTGACAATTTCTTGTTAGTTTACCATTAACTGACACGAATTTACTTCTTTCTAACAGTATAAAATCATCCAAAAGGAAAAGTCAAATGATTTTAGAATTCAAATTTGAAGATGAAGACGTTATCAGAAAAATCACGCACTTAAGAAAAGTGATGAGTGGTACAGATATTTCTCGAAAAATAGCTAATGTTTTACGAGAAGAGTCAGAAGAGGCTTTTGATAATGAACGCTCGCCAACGGGTGAAAAATGGAAGGATTTAGATGTAGAAGGTCAAACTCGA # Right flank : AGCCCTTGTGAAAGCCCTTATATCAAGGGCTTTCAACGATTTTAATTATAAAAAAATTTCTTTGCTTTCTATCATTTTTTTATATTTTTTTCTGATTTTTTGAAGGAAAAAAAGAACGATAATATAGATAAAATTATCTTATTTTTCTAAAAAGACTTGTTTTTTATTATTATCTCTGTATATAAAACAAGCAAACAGAAAAAATTTTTATGTATAGTAGATATAGATAAAAACATTAAAAAATTTAAAAAAGTAGCATTTGATTTGTGTTGACTTTCTTTTCTTGAATTTTTAATTTTCCAAGTAAAATATGCATACTTGCAAACTGTTTTTCTGTTACTTCTAAACAACGTATAGATCCTTCTTCGGGTAAATTCTCTTGTAAACGTTTATTATGTTTTTCTAAAGCATCTCTTCCTCTAACGATTCGGCAATAAACGGAAAGTTGTAACATTTGATAACCATCTTTAATTAAAAAATGACGAAAACGATTTGCAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCTGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 1180877-1181095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016605.1 Bisgaardia hudsonensis strain M327/99/2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 1180877 32 100.0 28 ................................ TCACGCAGTAAAAGAAATGAAAGCTGCT 1180937 32 100.0 31 ................................ AGATATGAAAAAAGCACCTATGAAAGCAGCT 1181000 32 96.9 31 ..........................C..... AGATGCAAAAAAAGCACCGGTGAAAGCTAAA 1181063 32 96.9 0 .....C.......................... | A [1181093] ========== ====== ====== ====== ================================ =============================== ================== 4 32 98.4 30 GAAGGTAAATGTGGCGAAGGTAAATGTGGTGC # Left flank : AAGATGCGTTTCCTTTTCCCTTCAACCTAATTCCAGCTGAATTAAATTGGAACTTAGCAATGGGAGCTGAATTATTACTCCCAGTATTGCTTGTGTTAGGTTTATTCACTCGATTTAGTGCTATTTCACTCGCTATCCTAACTGTAGTTGCTTGGGTCTCTGTACACCAAGGTAATGGCTATAATGTTTGTGATAACGGTTACAAAATGGCACTTATCTATCTAGTTATCTTGCTACCAATTATTGCGCAAGGTGCTGGTCGTTTATCTGTAGATTATTTTTTACAGAAAAACTTTTTAGCCAAAAGAACTTGGTTAAAATATCTTTAACTTTAACTTAAAAATTTAGGAGAAATCTCAATGAAAAAATCACTATTAGCGTTAGCAGGTGCATTAACTATGGCAACTTCAGTTCAAACAATGGCTGATGAACATAAACACGATAAAAACATGGATTGTAAAGACAAAAATGCTGAAAAATGCACGTCTCACAAAGGCATG # Right flank : CCATTAATTAAAATAAAATGGTAGGAGGCGTAATTTATTTTACAAATCCTACCGACTATAATAACAATAAAAAGGAGTCGTTATGTTAATAGGTGCAGGTTTAGGTTATCGTAGAGATATTGCTGAAGGCTTTTTAGATTTACCAGAAAATAGTGCTATTCAATTTATTGAAGTGGCGCCAGAGAATTGGTTAAAGATGGGTGGATTAGCTCGTTACCAATTTGATAAAGCCGCAGAGCGTATTCCTCTTGCAGTACATGGCTTATCGCTTTCTTTAGGTGGACAAGCTCCTTTGGATAGAGAATTGTTATCTGGTATTAAACAAATGATGAAGCAATATGGATCAGATTTTTTCTCTGAACATTTGAGTTATTGTGAATGTGAAGGCCACTTATATGATTTATTACCAATGCCATTTACTGAAGAAGCAGTAAAACATACAGCAAACCGAATAAAAGAAGTACAAGATTTTCTTGGTGTGAGAATATCACTTGAAAATA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGTAAATGTGGCGAAGGTAAATGTGGTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1305681-1307280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016605.1 Bisgaardia hudsonensis strain M327/99/2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1305681 37 100.0 34 ..................................... TTATTGCAATAGTTGCAGCTGGTGCTGGGTTAAT 1305752 37 100.0 34 ..................................... TGATTAGCTAAATTATAATCTCCCTTAGTTTCGT 1305823 37 100.0 32 ..................................... CAGGTTAGTGCAATGGTATAAGCAAGCTTAAC 1305892 37 100.0 35 ..................................... TGATGAAACGTCATAGTTTTTCTCCTATTTTTTAG 1305964 37 100.0 34 ..................................... ACACTTCGGCACCGGAATCAATAGTAATTTTTCT 1306035 37 100.0 37 ..................................... ATTGAATATACACCATACCCTACTTGTCGTTCACTTT 1306109 37 100.0 33 ..................................... ATCGGTACAGAATTTAATACCGCATTTCGCCAT 1306179 37 100.0 35 ..................................... TTGTTGGTAGTTTTTTACTTTGTGCCTGTTGTACT 1306251 37 100.0 35 ..................................... GAAGTTGGGGTTTCAAATCCGGGGATTGTAGTTAA 1306323 37 100.0 34 ..................................... ACAAACTCGTCCATTTGTTTTACAATACTGTCTT 1306394 37 100.0 32 ..................................... TCTTCCGGCACAAAATCCTCAGGCTGAGCTTT 1306463 37 100.0 33 ..................................... AAGTTTATTATGTAGCTTCTCAAAAGCTTCAAA 1306533 37 100.0 34 ..................................... GGCTCTATTATTTCTGATACTGTTGCATTTTCGT 1306604 37 100.0 36 ..................................... TCATGTAATTGGCGGTATTTTTCTTCACTAAACTTA 1306677 37 100.0 31 ..................................... TTTTTACCTCAATTCTTGCTTAATTGTTTGC 1306745 37 100.0 35 ..................................... CCGCCAGGCATATCGGAGTCATCGTAGCGATTAAT 1306817 37 100.0 32 ..................................... GTGATTCCTCGTAAACACCGACTAGCAATAGT 1306886 37 100.0 32 ..................................... TTTTTCACCGGTGGCTGCGCCTGAGGGTGTAC 1306955 37 97.3 36 ..........G.......................... ATATTTTTCTACTATTTCCGCTTGCTTTCTAAAGAA 1307028 37 100.0 36 ..................................... AATGCTCTAGACGAACTAGACCTAGTTCTAGGACGT 1307101 37 91.9 33 ............A......CT................ TTCAGAGTGAGTTTAACCCCAAACGACTCTAAG 1307171 37 91.9 36 ............A......CT................ GTTGGAACGAGTACTTCTCTAGAATATCTCTATTCA 1307244 37 83.8 0 ............A......CT..........A..C.T | ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 98.5 34 GTCGAAAGACACCGCCCTGTACGAAAGGGATTAAGAC # Left flank : ACCATGTTAAGTAATATTCAATTTAATTTTTAATTCATCAAGGAATAAAAATGCAATATTTAATTGGCTATGATATCTCAGATGAAAAACGCTTACAAAAAATACACCGACGCATGCAAAAATATGCGACTCCTATCCAATATAGTGTTTTTTTGTTTGAAGGCGATCAACATAAACTCCAAGAATGCTTAAAAACTATCTTAACTATTCTAAATAAAAAAGAAGATGATTTACGAATTTATCCGCTTTCTAAAAACTCAAATCAATGGAAAATAGGTAAACCAATTTTACCAGAAGGCATTATTTGGACAGCTTTAACATAACAAAATTATATCGTATCTTTATTTAAAATAAGGTAAAATATACTACATAAAACAAGCAGTAGATCATTAGATTGTTTATTTTTAAATCAATTCAATACCCAACGAATCATTGGTACAAAAATTTTGGGAAAGTCTTAGCTAACCCATTAAAAAACAAACAAAATATAACTATCTGCA # Right flank : TTAGTGTTTACTTGTAGCTAAGTAAAATTACCAGTTTTCACATATCTAGCACATAAATATAGATAACATTTGATTTGATGAAGCAAGGAAGGCAAAACATTATTTTGAATATATTAGGAAACAAAAAAGCCTTTTATCACTAAAAGGCTTTATAAAAATAAGATCGAATTAATTATTGACGTTTTCCACCAAATCCTACATATACGGCACCGTCTTTAGTGACGTGTCCAATAACTTCTTCACCTTTTGGTCCAACAAAAGCACCGTCAAACTTACTTTTAACATCTAGATAAGAGGCATCACCATAAAATATAGGGTTTTTACTAGATATTCTTCCATTTGTTAAATTAATATCAGCTATTGGTTTTCCTGATTCTAAATGTCTATCGTAAATTTTACCAGTTAAGGTTTTATCAGAAAAATTAACATCTAATTGTAATTTACCTCTTGTTGCAACACCTAAAGACTCTCCTTTATAGGTAACAGTCCCTGATTTTGGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACCGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //