Array 1 1499001-1498107 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017486.1 Mannheimia haemolytica strain 39394 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
   1499000	    32	 100.0	    35	................................	TTACATATTGCCAAAGGCAACCTAAAAGACCACTC	
   1498933	    32	 100.0	    33	................................	TTTTTATTGTTGATTTTGACAATAGACTAATGT  	
   1498868	    32	  96.9	    34	T...............................	TATTTTTTGTATTTTTTAAGAATTTTATTAAACT 	
   1498802	    32	 100.0	    35	................................	TGATTTACTAGACCTTTTAACAAATTATAAAAATT	
   1498735	    32	 100.0	    34	................................	ATCATTCCAGTTTTCAGCCGTTCGCCTTGCGGTG 	
   1498669	    32	 100.0	    34	................................	ACCACCTCCTCCGAGATGGTAGGCAAGGGGATTA 	
   1498603	    32	 100.0	    34	................................	ACCCGCTTGCGGTAAAGCTCTAGGCTCTCACCCT 	
   1498537	    32	 100.0	    35	................................	TCTTAAATCGCTATCGCTCTCTTCATCTGCGCCAA	
   1498470	    32	 100.0	    33	................................	CAATCAAGGCGGCCATTTCGGGGGTAAATTCGT  	
   1498405	    32	 100.0	    35	................................	AGGGATAAGCTCTTCGCCCTCGCTGCATTGCATTA	
   1498338	    32	 100.0	    34	................................	GCTTACATCTAGACAGACGAGCAAGTGCTGAAAC 	
   1498272	    32	 100.0	    35	................................	ACTGACATCGGCGTAAATGCGTGGAAGATTTTCGA	
   1498205	    32	 100.0	    35	................................	TCCGTGTTTGTGGTTATGTTGATGTACAGGCAATT	
   1498138	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        14	    32	  99.6	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   TTGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGG
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.24
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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