Array 1 172808-173767 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QKVB01000001.1 Streptococcus agalactiae strain 3H1V NODE_1_length_200396_cov_55.8993, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    172808	    36	 100.0	    30	....................................	ACTATGTCAATCAAGGATATCTTGATGGAT	
    172874	    36	 100.0	    30	....................................	TATACCGTTTTCCGTCCAATCAAAACCGAC	
    172940	    36	 100.0	    30	....................................	TATACGAGATACCGGTGACGGTGGGTATTA	
    173006	    36	 100.0	    30	....................................	TGATACCTTTATTTTCATACACAATCCACT	
    173072	    36	 100.0	    30	....................................	GAAGTATACTACGGTTAGAGATTGGCTCAA	
    173138	    36	 100.0	    30	....................................	GAAACTTCGATTAGTTTGCGTACTCGCTCA	
    173204	    36	 100.0	    30	....................................	ATTAGTCCTGTTGTTATGATGGATGATTAT	
    173270	    36	 100.0	    30	....................................	ACAAACCTCTAATGGATAATATAGAACAAA	
    173336	    36	 100.0	    30	....................................	ACACAATTAAACATAAAGAAGTGCTTATTT	
    173402	    36	 100.0	    30	....................................	TCAGGAGATTGTGTGTACTCACGAATTTTT	
    173468	    36	 100.0	    30	....................................	AAATTGTTTTTGTTGTAATATAAAGTCGAC	
    173534	    36	 100.0	    30	....................................	GCTAGCATGGCACAAAAATAGCGTTGGAAT	
    173600	    36	 100.0	    30	....................................	TTAATAACTGTCCGTTTTGCCATTTCTTGC	
    173666	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    173732	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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