Array 1 830038-832387 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916826.1 Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 830038 29 100.0 32 ............................. ACTTACTTCCAGGTGCGCGGCTGGAAAGACGA 830099 29 100.0 33 ............................. TGATATGCGGCTTGAATCGCTCAAGAAGCGGCC 830161 29 100.0 32 ............................. CAGCTGATGCAGGTGTACGGGATCGACTACGG 830222 29 100.0 32 ............................. CGTGGCTTTATCATGACCCATGGAATTATGCT 830283 29 100.0 32 ............................. TAGCAAAGGGGTTTAACAAGGTGCTCGGCGCA 830344 29 100.0 32 ............................. GCCAGAGCGGTGATCGAGCGCGATCTACTGGA 830405 29 100.0 32 ............................. CCCTGCTCACGCAGGATCTTGTACTGCTCGGC 830466 29 100.0 33 ............................. TAGTCATAGACAACGCTTGTGGCACCTATACGG 830528 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 830589 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 830650 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 830711 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 830772 29 100.0 32 ............................. ACTGGCGCAAAACCAGCTTTGACGGCGCTCAC 830833 29 100.0 32 ............................. CTGCCATACATCGCCCAGTTTAGTGACAGGCT 830894 29 100.0 32 ............................. CCATCGAATTGATTTGCCCGATGGTAACAATT 830955 29 100.0 32 ............................. GGTCACGCATTGTCGTCCTCCGGGTGGTAGTT 831016 29 100.0 32 ............................. ATTGCCGACCATTTCAACGATGAAACAAAGAT 831077 29 96.6 32 ............................A GCATCAGCGCGGCCAGGACGATCACTGTCCAA 831138 29 100.0 32 ............................. TACGTGGCCGACCTGGCATATCAGGCAGGGAT 831199 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 831260 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 831322 29 100.0 32 ............................. TTGCTGAAATTCGCGCATCAGGCAGCCTCCAC 831383 29 100.0 32 ............................. TGCTAAGGCGTTGGGTAGCATTATTATTTTGC 831444 29 100.0 32 ............................. AATGAAGTGCCGCCAACGCGACAGGCGCACGT 831505 29 100.0 32 ............................. AGCGCGGACGCTATGCAACACATAATTGATTC 831566 29 100.0 32 ............................. TAGCGGCTCAGGTGTGTCTGCTCAGCGGTAAT 831627 29 100.0 32 ............................. TTGGGGGACAGCTTGACGACACCCATCGAAAC 831688 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 831749 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 831810 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 831871 29 100.0 32 ............................. TTACGAGGCCTGCCGCGCACAGGCCTACAGAC 831932 29 100.0 32 ............................. CCGAGCTGGCCAGCATCATCACCGCCCACCGC 831993 29 100.0 32 ............................. GCCACATTGTTACCGGGATCAAGAATGACTTC 832054 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 832115 29 100.0 32 ............................. CACCCGGAATTTCCCGCCCGGCACAGTCGGCG 832176 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 832237 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 832298 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 832359 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGCCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : CGCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 842637-846204 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916826.1 Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 842637 29 100.0 32 ............................. CCAGATCTCTGGTGCCAGGGCGAGATCAGCAG 842698 29 100.0 32 ............................. GGCGAACACACGCCAACGGGCGACTATGTGGC 842759 29 100.0 32 ............................. CGCGCGGCGGGCATATTCGGCATCGCTCATGC 842820 29 100.0 33 ............................. GTCAACACCAAGATGCGCGTCAGCTTCCAGGGC 842882 29 100.0 32 ............................. CACGAATGGCGCGGCCTGAGCTGGAGCACCAA 842943 29 96.6 32 ............................C GCCGAAAGCCTTGCTCGACACTCTCAGTAGCC 843004 29 100.0 32 ............................. GCCCCGAATTTCGCTTTGAGCTTGACAAGGTG 843065 29 100.0 32 ............................. AAGAGGGCCGTTGTTTGATCCAGGAATGCTGG 843126 29 100.0 32 ............................. CCAATACCCGTACCGTTGGTAACAATCAGTTC 843187 29 100.0 32 ............................. CTACGAGATCGACGGCCAGCGGCTCGACCGGA 843248 29 100.0 32 ............................. TTCTACAACGCCGACGAGCGCTCCTGGTTCAC 843309 29 100.0 32 ............................. CCAGCGCCTCGAGGCGGTTCGCCCACTTGCCC 843370 29 100.0 32 ............................. GCTCTGGTATGGGCCTGGTCCGCGCTCCTCGA 843431 29 100.0 32 ............................. CTCGCGCCGGCCAGCTACCGCCGTTATCTGAC 843492 29 100.0 32 ............................. TTACATTCGTGCATGTAACACGCACGCAAACC 843553 29 100.0 32 ............................. TACAACAAACCGGTCGAGCAGCAACTGCTTAA 843614 29 100.0 32 ............................. GAGTAGGAAACGTGCCGATTCTCAACATGATG 843675 29 100.0 32 ............................. GCTCGGGGGCTTCTTTACTTGATACATAGAAA 843736 29 100.0 32 ............................. TCCATCCGTATGGAGATCAACGCCGAGGCCTG 843797 29 100.0 32 ............................. CAGTACATCCAGTACAAAGCGCTGGACTTCAA 843858 29 100.0 32 ............................. GCCCTGGGAGGCGTCTACACGCTCGAACTGAC 843919 29 100.0 32 ............................. AGTACCTCGTAGACCTGAATGCGACCCAGGCA 843980 29 100.0 32 ............................. CCACCAAACAGGGCGTCACCGTGCGCCTTAAT 844041 29 100.0 32 ............................. CGGCCGAAGTGCGGTACCGCGGCCCGAACAAC 844102 29 100.0 32 ............................. CCCTCGGTGGCCTGCTGGTTGTCGCGCAGGGT 844163 29 100.0 32 ............................. TACATCAGCAAGGACGGCCCGGACATGATCCC 844224 29 100.0 32 ............................. AGGAACTCAAGGCCAAGCTGCTGCCCGACTAC 844285 29 100.0 32 ............................. TTGGTGCCCAGGAAGTGCAGCTCGGCGTTGTT 844346 29 100.0 32 ............................. ATATGACAGAGCCAGCATCTACCGCGTTCGGC 844407 29 100.0 32 ............................. ATGCACGCGCCCGATGCCATCGCGGTAAGGGT 844468 29 100.0 32 ............................. TTGAGACGGGCAGTGTCAGGCACGCTCACACC 844529 29 100.0 32 ............................. GCGGCCTTGCGCTCGGCGAGGATGGTTTCGTA 844590 29 100.0 32 ............................. ACCAGGACTTTGTCCGGGTTGCCGCGCAGTTC 844651 29 100.0 32 ............................. ACTTTCCTGCCCAACGACCTGGCTCGTGGCGA 844712 29 100.0 32 ............................. GACGGCTACGAATGCCGCCAAACCGACTTCGA 844773 29 100.0 32 ............................. CTCACCGGCGACCCCATCGTGTTGTGGAACAA 844834 29 100.0 32 ............................. CTGGCCAGGCCACGACGCCCGCCTTCGTCGGT 844895 29 100.0 32 ............................. TTACCCACGGCCTGGCCAACGGCTGGCACCCT 844956 29 100.0 32 ............................. ACGCAACCGACCAGGCGCGCGCGGCACTTCCT 845017 29 100.0 32 ............................. TACATTTCCAGCTCCACCTGCGCGGTGGTCAG 845078 29 100.0 32 ............................. CCGGCATAGAACAACCATTCACCGCTCCAGGG 845139 29 96.6 32 ..............T.............. CAACCAAGGCCTTCACCTTCCGCGAGGGGGGC 845200 29 100.0 32 ............................. GCTGGCAATCATCAATTGCCTCTTTGAATTTC 845261 29 100.0 32 ............................. CGCGCATCAGCGAATATTCGCCGACTTCCTTC 845322 29 100.0 32 ............................. TTGTGGTGAACGTCGCTTTCTTTCAGGATTCG 845383 29 100.0 32 ............................. GGCACGCTGCAGGTCGACCCGAACCTCGCCAC 845444 29 100.0 32 ............................. GCGTCCAGGCGCCGTTTCAGTTCGGCGACATT 845505 29 100.0 32 ............................. GACGAGGACAAGCTCGCGCCGGCCAGCTACCG 845566 29 100.0 32 ............................. GCCGAGGGAGGCGTCTACACGCACGAACAGAC 845627 29 100.0 32 ............................. ACCGGCGAGGCCTTCGACCCCCGCGACAAGGT 845688 29 100.0 32 ............................. CAGTGCTGCACCTGGACACCGTTGGCCCCGAA 845749 29 100.0 32 ............................. ATTCAGGAGCGTCGCCGGCTGGAACTGGAGCA 845810 29 100.0 32 ............................. ACAAGTATGCTCACTTCAGTATCCGCGCTGAG 845871 29 100.0 32 ............................. AGAATGGTCACAATGTCGTAACACTGGCCGAG 845932 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 845993 29 96.6 32 ...C......................... GTGGCGGCGCCACGGTGATCAGGCGCAGGGTG 846054 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 846115 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 846176 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATTCCTACCATTGAGGAGGTGCTGTCCGCTGGTGGTATCTCACCACCTGAGGCGCCGCCGGAGTCCGTGCCGCCTGCTATCCCCAACCCCGAAAGCATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTGGTGGTCACCGAGAACGTCCCGCCGCGCTTGCGTGGGCGTATGGCCATATGGCTGCTGGAGGTGCGTGCGGGTGTTTACATCGGCGATGTATCCAAACGTACTCGCGAAATGATCTGGGAACAACTGAGCCAGGGCCACGAGGGCGGAAACGTTGTAATGGCCTGGGCGAGTAACCACGAGTCGGGTTACGAGTTCCAGACGCTCGGCCCCAATCGCCGCTTGCCGGTGGACTTCGATGGCCTGAATCTGGTCGCCTTTCACCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTGGTTTTTCCTTTAAGGAACAATTGGTTACGCTAAGT # Right flank : TGGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4439047-4441655 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916826.1 Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4439047 28 96.4 32 ...........A................ ACAAGCCGCGACCGCTGTGCTGGACGAACAAG 4439107 28 96.4 32 ...........A................ GATCTGCACACACACAACGAAGCAGTGCGCGA 4439167 28 96.4 32 ...........A................ AACAGCTACGCCGCCTTTGCTCCGCACCTAGA 4439227 28 96.4 32 ...........A................ AACAGCTACGCCGCCTTTGCTCCGCACCTAGA 4439287 28 96.4 32 ...........A................ AGGAAAGAAAAAGCTCTTCCCCTCTTATAGAA 4439347 28 96.4 32 ...........A................ CGGTCTACTACCACAACATACGCGGCTTCGAT 4439407 28 96.4 32 ...........A................ ATTGCCGGGACCGCCGCCACCAGTATCGCCGC 4439467 28 96.4 32 ...........A................ TGTCCACGCACAAGATTTACGGCTTCGACGTG 4439527 28 96.4 32 ...........A................ AGGAACACAAAGCGCGTCCGCCTGGCGAACAT 4439587 28 96.4 32 ...........A................ AGATACTTGCAGTACGCGATGATCAGCGGCAG 4439647 28 96.4 32 ...........A................ ATCATTGCCGCCATCACCTGGATCAGGCGGGT 4439707 28 96.4 32 ...........A................ CAGCTCGGCGCCGATTTATGACGAAATCACCC 4439767 28 96.4 32 ...........A................ TGGAGAAAGACCATGAACAAGACCACCAACCC 4439827 28 96.4 32 ...........A................ TGGGTGCATCGCCGCTGTCAGATGAGCAGCGG 4439887 28 96.4 32 ...........A................ ATGGCCAGCGGTGACTGGCGAAGGTGGTGCAG 4439947 28 96.4 32 ...........A................ TACAGCAACCCGCTGGAGCTGCGGGTAACCCA 4440007 28 96.4 32 ...........A................ ACGCGGTATTGGTCGGCGCCGGCCACGGCAGT 4440067 28 96.4 32 ...........A................ AGGGCACGGACCAATCGAACGAGCCGTTCTGC 4440127 28 96.4 32 ...........A................ AGGGTACGGACCAATCAAACGAGCCGTTCTGC 4440187 28 100.0 32 ............................ TGTCTATCATCGGCATGGCCATCGCTGAAGAC 4440247 28 100.0 32 ............................ AGTCACGGACGCCGGAGGCGATTGCTCTAAAG 4440307 28 100.0 32 ............................ TCGCCGGTCAGGCGGGTGATGGTCTGCGCCTG 4440367 28 100.0 32 ............................ GAACATGACGCGATTTTCATCGGTGTCTTCGC 4440427 28 100.0 32 ............................ ACTGACAGACCTGCTCTTTGTTCTTGCGCAGG 4440487 28 100.0 32 ............................ GGCAAGGCCATGTAAACGATCTTGCCGCAGCT 4440547 28 100.0 32 ............................ ATTACGCGCCGCGATGGAGTCGGTATTCGATA 4440607 28 100.0 32 ............................ ATCGGCGTATCGTCGAGCGCCTGGTACTTCTC 4440667 28 100.0 32 ............................ AAGGGGGCCGGTCACATGAAGGCCGCGCAAGA 4440727 28 100.0 33 ............................ TTCGGCGCTGCTCTGAAGAGCCTGCAGAACAAG 4440788 28 100.0 32 ............................ AACGCAGGGAGAGCGACATGGGTTTGACATTG 4440848 28 100.0 32 ............................ GGCAAACCCACGCCCTTCGTACCTCTGCGCGA 4440908 28 100.0 32 ............................ CTCCCCTCGCTATTGACCAGGCACGACTTTAC 4440968 28 100.0 32 ............................ CAGGTGATCCGGTGGATTCTGTAGACCATCCC 4441028 28 100.0 32 ............................ TCGAACACAGCACCAGGCTGCGGCCGGCCGAC 4441088 28 100.0 32 ............................ TTGTCGCGGAAAATCGCCTCGGCAGCCTCCCG 4441148 28 100.0 32 ............................ GGTGTTGAACAGCAGCACGCTCACGCGCGGGT 4441208 28 100.0 32 ............................ TGCCGGGCGATGTCGCCCAACATGGCCCAGAG 4441268 28 100.0 32 ............................ ACGACATTCGAGCGAAGTCACTTACCGACGCA 4441328 28 100.0 32 ............................ ATAACGGCAGCTTTCAGAATCCCAAGCGCGCT 4441388 28 100.0 32 ............................ TACAGCCGCATTTACATCGCTACTCATCTGCA 4441448 28 100.0 32 ............................ AGGTAGGCGTCAGCGTTCTGCGTCATCGGCCC 4441508 28 100.0 32 ............................ TTGCGCGGGCCGTAGGGGGTGCCGTCCGGGTT 4441568 28 92.9 32 ...........A.............C.. TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 4441628 28 78.6 0 ............A........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 44 28 97.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCCCAGCCCGGCCATCAGCAAATGGGTTAGCCAGTAGCTGGCGACGTAACGCAGCCAGAACGTGGCATCGGTGGCGACATCGCTCATCAGCCACCCGATCAGCGTGACCGCGATGCTGACCACGCTCATCAGCAGCGCCACGCCCACCAGATGCAGCGGCAACACCGGCAGTTGCCTTGCGGCCAATGTCGGCGCGAGCGCTTCCGGGGCGAAGGGATTGGGCTCGGTCATGGGGCGATCCTTGTCGTCGATACAGTCCGTTGGGAGGTAGTCGGAGAATAACGACCTTGTTGACGCTGGAAAGTGCAAAAGCCCGTTTGCGTGCTGCAGTCGATGCAAGGGAGAGAATTTATCCACCTTCCTCAACAACCCTTTTTTCTCGTCACAACTCTCACATCTTTAAAATCAGACACTTAACTAACGACCAGAAAAAAGGGTAGAAACGCCTCCAGCCGGGCTTTGATTTTGATAAACAACCACTTGCCCGCTATCTTCCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTCACCGATGCCGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4455183-4457251 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG916826.1 Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4455183 28 100.0 32 ............................ ACAGTGTTGGCGGTGACTTCTTTGTACGGCTT 4455243 28 100.0 32 ............................ CAATGACGGCACCGGCGGCGGCTCGCCTGGTT 4455303 28 100.0 32 ............................ TGCCGGCGAACCTGTACCGCGTGCCCGAGGAG 4455363 28 100.0 32 ............................ ACGCCGATCAGCGCCTTGGCCACCTTCTCGAA 4455423 28 100.0 32 ............................ TCGGCGCGGGTTTGTTCGATGTCATTCGCCGC 4455483 28 100.0 32 ............................ TGGCCAGCCGCATGCAGGGCTTGGTGATGGGC 4455543 28 100.0 32 ............................ ACCACGAGCCTGAACCGCTTTCAGCTCTGGCT 4455603 28 100.0 32 ............................ TCGGCCCCGGCGACGAAACCATCACCCTGCCC 4455663 28 100.0 32 ............................ GCCATGGCGTCGTCCACTACTCGGGGGAGGCC 4455723 28 100.0 32 ............................ AGACGATGGCGCTGATTTCTGCCTTGATGCCG 4455783 28 100.0 32 ............................ AAGAAAGGAAGGTGAGTAGTTTTGAAGAACGG 4455843 28 100.0 32 ............................ TATGTCGATGGCCGAAGCACCTCGAAAGACGA 4455903 28 100.0 32 ............................ AGCTTGCGCAAATCCTCCAGACGGTGCCAAGC 4455963 28 100.0 32 ............................ CAAGAGTTCGCCGCCTGGCTGAATGAAAAAGG 4456023 28 100.0 32 ............................ ATTAAGGACAAGGCGAGTTGTAATCGCTGCAA 4456083 28 100.0 32 ............................ ACGCAGCGCCTGAATCAGCTGAAGCGCGGTGC 4456143 28 100.0 32 ............................ TGTGGGCGCTGTGCGACTACCAAGAGCGATTG 4456203 28 100.0 32 ............................ TCGAAGCGACCGTCATGCATCGCTGGCTCGAC 4456263 28 100.0 32 ............................ TATCAGGAAGCCCGGTTCCGCCGGGGCGGTGG 4456323 28 100.0 32 ............................ GGTAATCGTGCTGATGGCACCGGCAGCAGCTT 4456383 28 100.0 32 ............................ TCAAGGCCTGCCTGGTGTACGGCTATGGCACA 4456443 28 100.0 32 ............................ TCCACCATCACGGCATGCTTGCTTACCGTCGC 4456503 28 100.0 32 ............................ GGCAGTCGGTGAGGTCGGCGCTAGCTGGGATC 4456563 28 100.0 32 ............................ GGCAGTCGGTGAGGTCGGCGCTAGCTGGGATC 4456623 28 100.0 32 ............................ TTCGTAAGGCGGCCTTCTGTGGTCTCGGCCAG 4456683 28 100.0 32 ............................ GGCACCGTCCACCACTTCGATCTCGGCCTGTT 4456743 28 100.0 32 ............................ GGCACGTAGCGGAAGTCAAAGAAGACCTCCGG 4456803 28 100.0 32 ............................ TGTTCTGACCATCATGCTGGCGGGCGAAGACT 4456863 28 100.0 32 ............................ GCCACCAACCAGGCCATGGCCCAGCAAGAGGC 4456923 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 4456983 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 4457043 28 100.0 32 ............................ AGCAATGAGAACTCAGCCCTTATCTATGCAGG 4457103 28 100.0 32 ............................ AACCCTTGAAGGAATTGCAGGGCCCACAGATC 4457163 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 4457223 27 82.1 0 ......................TT.CG- | AA [4457244] Deletion [4457250] ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AAGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAACCCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCACCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //