Array 1 108016-106949 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWI01000004.1 Salmonella enterica subsp. enterica serovar Indiana strain BCW_2881 NODE_4_length_245310_cov_4.36229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108015 29 100.0 32 ............................. AGCACACATTGTGTGACGGTCGCCGTCTGGTT 107954 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 107893 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 107832 29 100.0 32 ............................. CTTGGAACCATAAAAGATGGGCAAATAGTGCA 107771 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 107710 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 107649 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 107588 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 107527 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 107466 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 107405 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 107344 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 107283 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 107222 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 107161 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 107100 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 107039 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 106978 29 100.0 0 ............................. | A [106951] ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125623-124557 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWI01000004.1 Salmonella enterica subsp. enterica serovar Indiana strain BCW_2881 NODE_4_length_245310_cov_4.36229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125622 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 125561 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 125500 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 125439 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 125378 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 125317 29 100.0 32 ............................. CCCCATCGGTAACCTCTCACTATCGGTGTGTC 125256 29 100.0 32 ............................. GCTTTTATGTCTGGTGGATATAACGCACTGAA 125195 29 100.0 33 ............................. CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC 125133 29 100.0 32 ............................. CGTATCCCGAAATCACGTTCAAGAAAAATCCG 125072 29 100.0 32 ............................. CCGTTGATCAGAACGGCAACGAACGCACGTAC 125011 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 124950 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 124889 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 124828 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 124767 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 124706 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 124645 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 124584 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //